| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,837,821 – 9,837,931 |
| Length | 110 |
| Max. P | 0.727002 |
| Location | 9,837,821 – 9,837,931 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.11 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -25.37 |
| Energy contribution | -25.65 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.727002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9837821 110 - 22407834 -CCUUGUUUUAUUUUAUUUCAUAUGC-UUCGGUGUCAUAAAUGUGGCACUGCAUGUGCUGGCAAAAUGCGCAUACGCAGCGUUGGCCGUUAUGAAGUAAAGUGGGUGUGUCA -.((..(((((((((((..(((((((-...((((((((....)))))))))))))))..(((..(((((((....)).))))).)))...)))))))))))..))....... ( -38.30) >DroSec_CAF1 46385 111 - 1 GCCUUGUUUUAUUUUAUUUCGUAUGC-UUUGGUGUCAUAAAUGUGGCACUGCAUGUGCUGGCAAAAUGCGCAUACGCAGCGUUGGCCGUUAUGAAGUAAACUGGGUGUGUCA ((((.((((.(((((((..(((((((-...((((((((....))))))))))))).((..((....((((....))))..))..))))..))))))))))).))))...... ( -37.20) >DroSim_CAF1 49488 111 - 1 GCCUUGUUUUAUUUUAUUUCGUAUGC-UUCGGUGUCAUAAAUGUGGCACUGCAUGUGCUGGCAAAAUGCGCAUACGCAGCGUUGGCCAUUAUGAAGUAAAGUGGGUGUGUCA ((((..(((((((((((..(((((((-...((((((((....))))))))))))))).((((..(((((((....)).))))).))))..)))))))))))..)).)).... ( -36.80) >DroEre_CAF1 49014 102 - 1 ----UG-----UUUUAUUUCGUCUGC-UUGGGUGUCAUAAAUGUGGCACUGCAUGUGCUGGCAAAAUGCGCAUACGCAGCGUUGGCCGUUAUGAAGUAAAGUGGGUGGGUCA ----..-----......(((..(..(-((.....((((((....(((((.....)))))(((..(((((((....)).))))).))).))))))....)))..)..)))... ( -31.20) >DroYak_CAF1 49149 101 - 1 ----CG-----UUUUAUUUCGUCUGC-UUCGGUGUCAUAAAUGUGGCACUGCAUGUGCUGGCAAAAUGCGUAUACGCAGCGUUGGCC-CUAUGAAGUAAAGUAACGGUGCCA ----((-----(((((((((((..((-..(((((((((....)))))))))...))((..((....((((....))))..))..)).-..)))))))))...))))...... ( -31.40) >DroAna_CAF1 46608 96 - 1 ----UG-----UUUUAUUUCGCCUGCCUUCGGUGUCAUAAAUGUGCCACUGCAAGAGCUGGCAGAACACUCAUACGCAGUGUUGGCCCUUGUGG-------CCAGGGGGUCA ----..-----.........(((.((((((((((.(((....))).))))).))).)).)))..(((((((....).))))))(((((((....-------...))))))). ( -33.00) >consensus ____UG_____UUUUAUUUCGUAUGC_UUCGGUGUCAUAAAUGUGGCACUGCAUGUGCUGGCAAAAUGCGCAUACGCAGCGUUGGCCGUUAUGAAGUAAAGUGGGUGUGUCA ............((((((((((..((...(((((((((....))))))))).....)).(((..(((((((....)).))))).)))...))))))))))............ (-25.37 = -25.65 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:32 2006