Locus 3396

Sequence ID 2L_DroMel_CAF1
Location 9,832,165 – 9,832,265
Length 100
Max. P 0.625752
window5372

overview

Window 2

Location 9,832,165 – 9,832,265
Length 100
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.25
Mean single sequence MFE -29.66
Consensus MFE -19.94
Energy contribution -19.44
Covariance contribution -0.50
Combinations/Pair 1.28
Mean z-score -1.41
Structure conservation index 0.67
SVM decision value 0.19
SVM RNA-class probability 0.625752
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9832165 100 - 22407834
CGUCG------GCGGCUUUGGCGCUGAA-AUUGAAUUUGCCAGCGACUGAGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAGCCACGC--AUACA--GUCGCAGUCGAAU
..(((------(((((((...(((((.(-(......))..)))))...)))))))...(((.......)))...........((.((..--.....--)).))...))).. ( -29.20)
>DroPse_CAF1 42895 89 - 1
CGUCG------GCGGCUUUGGUGCUGAA-AUUGAAUUUUCCAACGUCGGGGCCGCAAACGCAAAAACCGCGAUCAAAAUCUAUGCACGC--ACACA--CA-----------
.((((------(((((((((..(..(((-(......))))...)..)))))))))...(((.......)))...............)).--))...--..----------- ( -24.10)
>DroEre_CAF1 43317 104 - 1
UGUCGGCGUUGGCGGCUUUGGCGCUGAA-AUUGAAUUUGCCAGUGACUGGGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAGCCACGC--AUACA--GUCGCA--CGAAU
..((((((((.(((((((...(((((.(-(......))..)))))...))))))).))))))))....(((((................--.....--))))).--..... ( -36.20)
>DroYak_CAF1 42772 100 - 1
CGUCG------GCGGCUUUGGCGCUGAA-AUUGAAUUUGCCAGCGACUGAGCCGCAAACUCUGAAACCGCGAUCAAAAUCUAGCCACGC--AUACAGAGUCGCA--CGAAU
(((((------(((((((...(((((.(-(......))..)))))...)))))))..((((((.....(((...............)))--...)))))))).)--))... ( -32.86)
>DroAna_CAF1 40999 93 - 1
CGUCG------GCGGCUUUGGUGCUGAAAAUUGAAUUUGCCAGUGACGAAGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAUGUGCGUGGAUACA------------CAU
(((..------(((((((((..((((..((......))..))))..)))))))))..)))......(((((..((.......))..))))).....------------... ( -31.50)
>DroPer_CAF1 43448 89 - 1
CGUCG------GCGGCUUUGGUGCUGAA-AUUGAAUUUUCCAACGUCGGGGCCGCAAACGCAAAAACCGCGAUCAAAAUCUAUGCACGC--ACACA--CA-----------
.((((------(((((((((..(..(((-(......))))...)..)))))))))...(((.......)))...............)).--))...--..----------- ( -24.10)
>consensus
CGUCG______GCGGCUUUGGCGCUGAA_AUUGAAUUUGCCAGCGACGGAGCCGCAAACGCUGAAACCGCGAUCAAAAUCUAGCCACGC__AUACA__GU________AAU
(((........((((((..(.(((((..............))))).)..))))))...(((.......)))..............)))....................... (-19.94 = -19.44 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:25 2006