Locus 3393

Sequence ID 2L_DroMel_CAF1
Location 9,828,589 – 9,828,680
Length 91
Max. P 0.865072
window5367

overview

Window 7

Location 9,828,589 – 9,828,680
Length 91
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 82.77
Mean single sequence MFE -24.33
Consensus MFE -17.61
Energy contribution -19.00
Covariance contribution 1.39
Combinations/Pair 1.13
Mean z-score -2.73
Structure conservation index 0.72
SVM decision value 0.84
SVM RNA-class probability 0.865072
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9828589 91 - 22407834
UUAGAUUAUUUUUAUGUGCU-----------------C--UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA
................((((-----------------(--(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....)))).)))).. ( -27.40)
>DroSec_CAF1 36953 89 - 1
UUAGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA
..............(((((---------------------(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....))))).))).. ( -27.80)
>DroSim_CAF1 40233 89 - 1
UUAGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA
..............(((((---------------------(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....))))).))).. ( -27.80)
>DroEre_CAF1 39661 89 - 1
UUGGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGUGGCAGG
..............(((((---------------------(((....(((.(((((((((((((((((.....))))).)))))))))))).)))....))))).))).. ( -25.20)
>DroYak_CAF1 38091 79 - 1
UUAGAUUAUUUUUAUGUGC---------------------UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUU----------
...................---------------------.......(((.(((((((((((((((((.....))))).)))))))))))).))).....---------- ( -20.00)
>DroPer_CAF1 39740 107 - 1
UUAGAUUAUUUUUAUGUGUGUUGUGUUUUCCUUGUGCCUUGUAUUUUCGCAUGCUUAAGUAGUUAGUUUAAUAAAUUGCAUUGCCUAGUAAGAGGCGGAUGAGGUGA---
.............................(((..((((((.((((...((((((.....(((.....))).......))).)))..)))).)))))..)..)))...--- ( -17.80)
>consensus
UUAGAUUAUUUUUAUGUGC_____________________UUAUUUUCGCAUGCCUAAGUAGUUAGUUUAAUAAAUUGCAUUGCUUAGGUAAGCGCCGUUGAGCGGCAGA
................................................((.(((((((((((((((((.....))))).)))))))))))).))((((.....))))... (-17.61 = -19.00 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:21 2006