| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,817,409 – 9,817,503 |
| Length | 94 |
| Max. P | 0.523748 |
| Location | 9,817,409 – 9,817,503 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 86.11 |
| Mean single sequence MFE | -15.13 |
| Consensus MFE | -11.35 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9817409 94 - 22407834 AAUUUUCUACG----------------AGUGUCAUAAACUCCCCUUUGGCUACAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUGCCAUAAGAGGAU .(((((((..(----------------(((((..((..(........)..))..)))))).......((((((((((((.......)))))....))))))).))))))) ( -17.00) >DroSec_CAF1 26051 109 - 1 AAUUUUCUACCAACUUAACUUUAUGACAGUGUCAUAAACUCC-CUAUAGCUACAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUUCCAUAAGAGGAU ...................((((((((...))))))))....-..............((((.(((....)))..(((((.......))))).............)))).. ( -13.20) >DroSim_CAF1 29240 104 - 1 AAUUUUCUACCAACUUA-----GUGACAGUGUCAUAAACUCC-CUAUAGCUAAAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUGCCAUAAGAGGAU .(((((((.........-----.(((.(((((..........-...........)))))))).....((((((((((((.......)))))....))))))).))))))) ( -15.20) >consensus AAUUUUCUACCAACUUA______UGACAGUGUCAUAAACUCC_CUAUAGCUACAACACUUCAACCAAAUGGUAAUAGUUAAUUUCAAACUAAAACUUGCCAUAAGAGGAU .(((((((...................(((((......................)))))........((((((((((((.......)))))....))))))).))))))) (-11.35 = -11.68 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:15 2006