Locus 3380

Sequence ID 2L_DroMel_CAF1
Location 9,796,118 – 9,796,214
Length 96
Max. P 0.963084
window5350

overview

Window 0

Location 9,796,118 – 9,796,214
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -26.60
Consensus MFE -20.84
Energy contribution -20.78
Covariance contribution -0.05
Combinations/Pair 1.07
Mean z-score -3.84
Structure conservation index 0.78
SVM decision value 1.55
SVM RNA-class probability 0.963084
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9796118 96 - 22407834
--UCGGUUUUCAUU-UCGGGAUCACGUGGACCAACACUAUUUUGUUUGAUU-UCCUUCAUUCCAGU-UUGCAAACAAAAUAUGAUCCCAGUGAAG--AAACCC
--..((((((((((-..(((((((.(((......)))(((((((((((...-..((.......)).-...)))))))))))))))))))))))..--))))). ( -28.90)
>DroPse_CAF1 5763 96 - 1
--UUAGUUUUGAUUUUUGGGAUCACGUGGACCAACAAUAUUUUGUUUGAUU-UCCUUCAUUCAAAUUUUGCAAACAAAAUAUGAUCCCAGUGAAA--AAAC--
--...(((((.....((((((((..((......)).((((((((((((...-..................))))))))))))))))))))....)--))))-- ( -24.00)
>DroEre_CAF1 7660 98 - 1
--UCGGUUUUCAUU-UCGGGAUCACGUGGACCAACACUAUUUUGUUUGAUU-UCCUUCAUUCCAGU-UUGCAAACAAAAUAUGAUCCCAGUGAAACAAAACCC
--..((((((((((-..(((((((.(((......)))(((((((((((...-..((.......)).-...)))))))))))))))))))))))....))))). ( -28.10)
>DroYak_CAF1 5108 96 - 1
--UCGGUUUUCAUU-UCGGGAUCACGUGGACCAACACUAUUUUGUUUGAUU-UCCUUCAUUCCAGU-UUGCAAACAAAAUAUGAUCCCAGUGAAG--AAACCC
--..((((((((((-..(((((((.(((......)))(((((((((((...-..((.......)).-...)))))))))))))))))))))))..--))))). ( -28.90)
>DroAna_CAF1 5142 99 - 1
CUUCCGUUUUCAUU-UCGGGAUCACGUGGACCAACAAUAUUUUGUUUGAUUGUCCUUUAUUCAAAU-UUGCAAGCAAAAUAUGAUCCCAGUGAAG--AAACUG
......((((((((-..((((((..((......)).((((((((((((.(((.........)))..-...)))))))))))))))))))))))))--)..... ( -25.70)
>DroPer_CAF1 5812 96 - 1
--UUAGUUUUGAUUUUUGGGAUCACGUGGACCAACAAUAUUUUGUUUGAUU-UCCUUCAUUCAAAUUUUGCAAACAAAAUAUGAUCCCAGUGAAA--AAAC--
--...(((((.....((((((((..((......)).((((((((((((...-..................))))))))))))))))))))....)--))))-- ( -24.00)
>consensus
__UCGGUUUUCAUU_UCGGGAUCACGUGGACCAACAAUAUUUUGUUUGAUU_UCCUUCAUUCAAAU_UUGCAAACAAAAUAUGAUCCCAGUGAAA__AAACCC
.......(((((((...(((((((.((......))..(((((((((((......................)))))))))))))))))))))))))........ (-20.84 = -20.78 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:03 2006