Locus 3376

Sequence ID 2L_DroMel_CAF1
Location 9,789,785 – 9,789,905
Length 120
Max. P 0.534565
window5345

overview

Window 5

Location 9,789,785 – 9,789,905
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.23
Mean single sequence MFE -30.07
Consensus MFE -20.83
Energy contribution -21.17
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.69
SVM decision value 0.00
SVM RNA-class probability 0.534565
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9789785 120 + 22407834
CUCACCUGGGGUUGUACUGAUUUGUCAUUCUCCAUUUCUGCAUCGUCAUCGGACUCCGAAUCCAUUUCAGCAGCAUUCUUGCCAUUUCUAACGGAUAAAGUCGGAGCCAUGCUCAGCUUG
......(((((.((.((......))))..))))).....((...(.(((.((.((((((((((.((......(((....))).......)).))))....))))))))))))...))... ( -25.62)
>DroSec_CAF1 6898 112 + 1
CUCACCUGGGGUUGUGCUGACUUGUCAUCCUCUAUUUCUGCAUCGUCAUCGGACUCCGAAUUUAUUUCAGCUGCAUUCUUGCCAUUUUU--------GAGUCCGAGUCGUGCUCAUCUUU
.......((((.((.((......)))).)))).......(((.((.(.((((((((.(((.....)))....(((....))).......--------))))))))).)))))........ ( -28.50)
>DroSim_CAF1 6928 112 + 1
CUCACCUGGGGUUGUGCUGCCUUGUCAUCCUCAAUUUCUGCAUCGUCAUCGGACUCCGAAUUUAUUUCAGCUUCAUUCUUGCCAUUUUG--------GAGUCCGAGACGUGCUCAGCUUU
......(((((.((.((......)))).)))))......(((.((((.((((((((((((.....))).((.........))......)--------)))))))))))))))........ ( -36.10)
>consensus
CUCACCUGGGGUUGUGCUGACUUGUCAUCCUCAAUUUCUGCAUCGUCAUCGGACUCCGAAUUUAUUUCAGCUGCAUUCUUGCCAUUUUU________GAGUCCGAGACGUGCUCAGCUUU
.......((((.((.((......)))).)))).......((((.....((((((((.(((.....)))....(((....)))...............))))))))...))))........ (-20.83 = -21.17 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:58 2006