Locus 3374

Sequence ID 2L_DroMel_CAF1
Location 9,785,779 – 9,785,878
Length 99
Max. P 0.882840
window5342

overview

Window 2

Location 9,785,779 – 9,785,878
Length 99
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 93.11
Mean single sequence MFE -19.86
Consensus MFE -18.26
Energy contribution -18.14
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.34
Structure conservation index 0.92
SVM decision value 0.92
SVM RNA-class probability 0.882840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9785779 99 + 22407834
UCGC-CAUUCAUUAUCUCUAACCCACAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA-AUCAAACAUUUGCCAACCGCUAACUGCCG
....-................((((......))))......(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -19.20)
>DroSec_CAF1 2970 100 + 1
UCGCCCAUUCAUUAUCUCUAACCCAUAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA-AUCAAACAUUUGCCAACCGCUAACUGCCG
.....................(((((....)))))......(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -20.50)
>DroSim_CAF1 2981 100 + 1
UCGCCCAUUCAUUAUCUCUAACCCAUAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA-AUCAAACAUUUGCCAACCGCUAACUGCCG
.....................(((((....)))))......(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -20.50)
>DroEre_CAF1 2907 100 + 1
UCGC-CAUUCAUUAUCUCUCACCCAUAUCUGUGGGGAUUUAGUAGUUAAGCCAGUGUAUUUGCACCCUUUAGAACAAACAUUUGCCCAGCGCUAACUGCCG
....-.............((.(((((....)))))))....(((((((.((..((((....))))..................((...))))))))))).. ( -18.40)
>DroYak_CAF1 3087 99 + 1
UCGU-CAUUCAUUAUCUCUAACCCAUAUCUGUGGGGACUUAGCAGUUAAGCCAGUGUAUUUGCACCCUCGA-AUCAAAUAUUUGCCAACCGCUAACUGCCG
..((-(.....(((....)))(((((....))))))))...(((((((.((..((((....))))...(((-((.....)))))......))))))))).. ( -20.70)
>consensus
UCGC_CAUUCAUUAUCUCUAACCCAUAUCUAUGGGGAUUUCGCAGUUAAGCCAGUGUAUUUGCACCCUCAA_AUCAAACAUUUGCCAACCGCUAACUGCCG
.....................(((((....)))))......(((((((.((..((((....)))).........(((....)))......))))))))).. (-18.26 = -18.14 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:55 2006