Locus 337

Sequence ID 2L_DroMel_CAF1
Location 1,011,976 – 1,012,067
Length 91
Max. P 0.940266
window537

overview

Window 7

Location 1,011,976 – 1,012,067
Length 91
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.78
Mean single sequence MFE -17.43
Consensus MFE -16.06
Energy contribution -16.05
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.92
SVM decision value 1.29
SVM RNA-class probability 0.940266
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1011976 91 - 22407834
UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUUGGGGCUUGCGA-----------------------------AAAAUU
........(((................(((....)))..............)))((((((((.((.......)).))))))))..-----------------------------...... ( -17.11)
>DroSec_CAF1 123680 99 - 1
UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUUGGGGCUUGCGA---------------------AAAUGAGAAAAAUU
........(((................(((....)))..............)))((((((((.((.......)).))))))))..---------------------.............. ( -17.11)
>DroSim_CAF1 124253 99 - 1
UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCCAACAACAACUGGGGGCUUGCGA---------------------AAAUGAGAAAAAUU
........(((................(((....)))..............)))(((((((((...........)))))))))..---------------------.............. ( -19.01)
>DroYak_CAF1 131025 120 - 1
UUACACUACACUACAAAUAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUGGGGGCUUGCGAAAUGAGAAAAAAUGAUGAAGAAAAUGAGAAAAAUU
..........((.((............(((....)))....((((.....))))((((((((...((.....)).)))))))).................)).))............... ( -16.50)
>consensus
UUACACUACACUACAAGAAAAAGCAAAUGAGAAAUCAAUAUUACAAUAACUGUGGCAAGUCCGAACAACAACUGGGGGCUUGCGA_____________________AAAUGAGAAAAAUU
........(((................(((....)))..............)))((((((((.............))))))))..................................... (-16.06 = -16.05 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:22 2006