| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,760,569 – 9,760,673 |
| Length | 104 |
| Max. P | 0.551836 |
| Location | 9,760,569 – 9,760,673 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.59 |
| Mean single sequence MFE | -33.32 |
| Consensus MFE | -18.57 |
| Energy contribution | -18.52 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9760569 104 - 22407834 ---UACCAGCGCCCUGUUCCACCUUUAGGCUCUCAAAGGGCUUUAAGCCAUCACCCUCAU------UGAGCAGCACAUCCAGCAGCUUAUCCUUUUCGUUGCUAAAGAUAUCG- ---.....(((((((......((....)).......))))).....((((..........------)).)).))..(((.((((((...........))))))...)))....- ( -20.32) >DroVir_CAF1 57900 105 - 1 ---UGCCCGUUGCAUGCUCCACUUUGAGAUUCUCAAAGGGCUUCAGGCUCUCGUCCGUGC------UGAGCAGCACAUCGAGCAGUUUGUCUUUCUCAUUGCUAUAUAUGUCCA ---.((((.(((....(((......))).....))).))))..((((((((((...((((------(....)))))..)))).))))))......................... ( -29.00) >DroPse_CAF1 41290 110 - 1 ---UUCCGCCGCCAUGCUCCACCUUGAGGCUCUCGAAGGGCUUCAGGCCAUCGCCCUCGUCCGUGCUGAGCAGGACAUCCAGCAGCUUGUCCUUCUCGCUGCUGAAAAUGUCC- ---...........((((((((..((((((((.....))))))))(((....))).......)))..)))))((((((.(((((((..(.....)..)))))))...))))))- ( -40.90) >DroGri_CAF1 58842 108 - 1 CGCUGCCGGUGGCAUGCUCCACCUUCAGAUUCUCGAAGGGCUUGAGGCCCUCGUCCUGGU------UGAGCAGCACAUCGAGCAGCUUGUCCUUCUCGCUGCUGUAGAUAUCCA ..(((((((((((.(((((.(((....((....(((.((((.....)))))))))..)))------.))))))).)))))((((((..(.....)..))))))))))....... ( -41.90) >DroAna_CAF1 48963 104 - 1 ---UGCCGGCGCCCUGUUCCACCUUCAGGCUCUCGAACGGCUUCAGGCCGUCGCCCUCGU------UCAGCAAGACAUCCAAUAGCUUGUCCUUCUCAUUGCUGAAGAUAUCC- ---....((((((.((.........)))))....((.((((.....))))))))).((.(------(((((((((((..(....)..)))).......)))))))))).....- ( -28.51) >DroPer_CAF1 40742 110 - 1 ---UUCCGCCGCCAUGCUCCACCUUGAGGCUCUCGAAGGGCUUCAGGCCAUCGCCCUCGUCCGUGCUGAGCAGGACAUCCAGCAGCUUGUCCUUCUCGCUGCUGAAAAUGUCU- ---...........((((((((..((((((((.....))))))))(((....))).......)))..)))))((((((.(((((((..(.....)..)))))))...))))))- ( -39.30) >consensus ___UGCCGGCGCCAUGCUCCACCUUGAGGCUCUCGAAGGGCUUCAGGCCAUCGCCCUCGU______UGAGCAGCACAUCCAGCAGCUUGUCCUUCUCGCUGCUGAAGAUAUCC_ ...........((.(((((.....((((((((.....))))))))(((....)))............)))))))......((((((..(.....)..))))))........... (-18.57 = -18.52 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:45 2006