| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,758,810 – 9,758,929 |
| Length | 119 |
| Max. P | 0.755379 |
| Location | 9,758,810 – 9,758,929 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 89.67 |
| Mean single sequence MFE | -26.57 |
| Consensus MFE | -20.50 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9758810 119 - 22407834 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCAAAACGGGGCUCCACCUUAACCCCCCGAUAUCGUGCGAUUCACGACUACAUAUCUACAUGCACCACCUACAUACAACACACACC .........(((.(((..(((((.((..(..((((.....))))..)..))..........(((((((((.....))))).....))))...)))))))).)))............... ( -23.00) >DroSec_CAF1 40878 119 - 1 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCAAAACGGGGCUCCACCUUAGCCCCCCGAUAUCGGGCGAUUCACGACUACAUAUCUACAUGCACCACCUACAUACAGCACACACC ...((((..(((.(((..(((((.(((((..((((.....))))........)))))(((((....)))).)....................)))))))).))).....))))...... ( -28.80) >DroEre_CAF1 40135 112 - 1 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCGAAAUGGGGCUCCACCUAGGCCCCUCGAUAUCGGGCGACUCACGACUACAUAACUAC-------ACCUACAUACACCACACACC .........(((((((((......))).((..(((((...((((((.......))))))......)))))..))...)))))).........-------.................... ( -28.30) >DroYak_CAF1 42329 112 - 1 AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCGAAACGGGGCUCCACCUUAGCCUCCCGAUAUCGGGCGAUUCACGUCUACAUAUCUAC-------ACCUACACACACCAUACACC ...........((.(((.((.((((((((..(((((...)))))........))))).((((....)))).))).)).))).))........-------.................... ( -26.20) >consensus AAAUGCUCCUAGUUGGCCUGCAUCGGCUGUACCCCAAAACGGGGCUCCACCUUAGCCCCCCGAUAUCGGGCGAUUCACGACUACAUAUCUAC_______ACCUACAUACACCACACACC .........(((((((((((.(((((..((........))((((((.......)))))))))))..)))))......)))))).................................... (-20.50 = -20.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:43 2006