| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,752,647 – 9,752,745 |
| Length | 98 |
| Max. P | 0.508158 |
| Location | 9,752,647 – 9,752,745 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.20 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -13.17 |
| Energy contribution | -15.36 |
| Covariance contribution | 2.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9752647 98 - 22407834 CCCCUCUCACAAUCCAUGCGGCCUUCCCACUUUUCCCCUAACUUUUCCUGAGGCUCAGUCCAAUGCGAAUUCAUUUCGUUUUGGGGAUGAAUCU--ACUC ...........((((.((.((((((........................))))))))..((((.(((((.....))))).))))))))......--.... ( -19.26) >DroSec_CAF1 34726 92 - 1 -CCCCCUCGCCAUCCAUGCGGCCUUCCCAUUUUUCCCCUAACUUUUUCUGAGGCUCAGUCCAAUGCGAAUUCAU-----UUUGGGGAUGAAUCU--ACUC -.((((((((......((.((((((........................)))))))).......))))......-----...))))........--.... ( -15.88) >DroSim_CAF1 33501 97 - 1 -CCCCCUCGCCAACCAUGCGGCCUUCCCACUUUUCCCCGAACUUUUCCUGAGGCUCAGUCCAAUGCGAAUUCAUUUCGUUUUGGGGAUGAAUCU--ACUC -.......(((........)))...........((((((((......(((.....)))......(((((.....))))))))))))).......--.... ( -20.60) >DroYak_CAF1 36017 100 - 1 AACCCCUCCCAAUCCAUGCGGCCUCCCCACUUUUCCCCUAACUUUUCCUGAGGCUCAGUCCACUGCGAAUUCAUUUUGUUUUGGGAAUGAAUCGGGACUU ......((((..........(((((........................)))))(((.(((...(((((.....)))))....))).)))...))))... ( -21.16) >consensus _CCCCCUCGCAAUCCAUGCGGCCUUCCCACUUUUCCCCUAACUUUUCCUGAGGCUCAGUCCAAUGCGAAUUCAUUUCGUUUUGGGGAUGAAUCU__ACUC ..........(((((.((.((((((........................))))))))..((((.(((((.....))))).)))))))))........... (-13.17 = -15.36 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:40 2006