Locus 3361

Sequence ID 2L_DroMel_CAF1
Location 9,749,123 – 9,749,233
Length 110
Max. P 0.500000
window5325

overview

Window 5

Location 9,749,123 – 9,749,233
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.88
Mean single sequence MFE -33.48
Consensus MFE -19.83
Energy contribution -20.50
Covariance contribution 0.67
Combinations/Pair 1.21
Mean z-score -1.56
Structure conservation index 0.59
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9749123 110 + 22407834
CUGUAAA--GCUACUU---UC-----GAGAACUCACUCUCUGAAUGCCUGGACAAUGGAGGAGUCACGCUGUUCCAUGGCAUUGAUGGGCACUCCCAUCGCCGUGUCACAGAUGACAUCC
.(((...--((....(---((-----((((......)))).))).))....))).....(((((((..((((..((((((...((((((....))))))))))))..)))).)))).))) ( -36.60)
>DroSec_CAF1 31254 110 + 1
AUGUAAA--GCUACUU---UC-----GAGAACUCACUCUCUGAAUGCCUGAACAAUGGAGGAGUCGUGCUGCUCCAUGGCAUUGAUGGGCACUCCCAUUGCCGUGUCGCAGAUGACAUCC
.(((..(--((....(---((-----((((......)))).))).).))..))).....((((((((.((((..(((((((...(((((....))))))))))))..))))))))).))) ( -38.00)
>DroSim_CAF1 30016 110 + 1
AUUUAAA--GCUACUU---UC-----GAGAACUCACUCUCUGAAUGCCUUAACAAUGGAGGAGUCGCGCUGUUCCAUGGCAUUGAUGGGCACUCCCAUCGCCGUGUCGCAGAUGACAUCC
..((((.--((....(---((-----((((......)))).))).)).)))).......(((((((..((((..((((((...((((((....))))))))))))..)))).)))).))) ( -36.00)
>DroWil_CAF1 46546 107 + 1
UUGGAAA--ACUAAUU---GC--------AACUUACUCUUUAAAAGCCUGUACAAUAUUCGAAUCGCGUUCUUCCAUGGCAUUAAUGGAUACACCCAUGGCUGUGUCACAUAUAACAUCC
.(((((.--......(---((--------(.(((.........)))..))))........((((...)))))))))((((((..((((......))))....))))))............ ( -15.10)
>DroYak_CAF1 32461 111 + 1
-UGUAAAGUGCAUAUU---UC-----CAAAACUCACUCUCUGAAUGCCUGAACAAUGGAGGAGUCGCGCUGCUCCAUGGCAUUGAUGGGCACUCCCAUCGCCGUGUCGCAGAUCACAUCC
-(((...(((.((.((---((-----((....(((..(.......)..)))....)))))).))))).((((..((((((...((((((....))))))))))))..))))...)))... ( -32.80)
>DroPer_CAF1 31195 118 + 1
AUUCGAA--GCAACGUCGCCCCAGCACACCACUCACUCUUUGAAGGCCUGCACAAUGGCGGAGUUGCGGUGCUCCAUCGCAUUGAUGGGCACCCCCAUGGCCGUGUCGCAGAUCACGUCC
.......--(((((..((((...(((..((..(((.....))).))..))).....))))..)))))(((((.(((((.....)))))))))).....((.((((........)))).)) ( -42.40)
>consensus
AUGUAAA__GCUACUU___UC_____GAGAACUCACUCUCUGAAUGCCUGAACAAUGGAGGAGUCGCGCUGCUCCAUGGCAUUGAUGGGCACUCCCAUCGCCGUGUCGCAGAUGACAUCC
...........................................................(((......((((..((((((...((((((....))))))))))))..))))......))) (-19.83 = -20.50 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:38 2006