Locus 3360

Sequence ID 2L_DroMel_CAF1
Location 9,740,446 – 9,740,541
Length 95
Max. P 0.550322
window5324

overview

Window 4

Location 9,740,446 – 9,740,541
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 87.78
Mean single sequence MFE -19.88
Consensus MFE -15.61
Energy contribution -16.87
Covariance contribution 1.25
Combinations/Pair 1.08
Mean z-score -2.17
Structure conservation index 0.79
SVM decision value 0.03
SVM RNA-class probability 0.550322
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9740446 95 - 22407834
AGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA
..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40)
>DroSec_CAF1 22846 95 - 1
UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACACAAAUACACACA
..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40)
>DroSim_CAF1 22022 95 - 1
UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA
..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40)
>DroWil_CAF1 34092 87 - 1
UUUUUCUACUUUUGCUUUGCUUUUGGCUUUUCCAUUUUACCAUCGACCCAAAUUGCGAGCGCGCAAC------ACAAACAUACGAAAA--ACACA
((((((((..((((..((((.(((((.....................)))))..((....)))))).------.))))..)).)))))--).... ( -11.40)
>DroYak_CAF1 23571 95 - 1
UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA
..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) ( -23.40)
>DroAna_CAF1 22765 91 - 1
UGUGAGUGUAUUCUCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCU-CGUAUAAUAAC---AAAAAUCCACACA
.(.((((((......(((((.(((((.....................)))))..))))).)))))).-)..........---............. ( -14.30)
>consensus
UGUGUGUGUAUUUGCCUUGCUUUUGGCUUUUCUAUUUUACCAUCGACCCAAAUUGCGAGCGCGCUCUCCGUAUAAUAACAACAAAAAUACACACA
..((((((((((((((((((.(((((.....................)))))..))))).)).......((......)).....))))))))))) (-15.61 = -16.87 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:37 2006