Locus 3357

Sequence ID 2L_DroMel_CAF1
Location 9,733,000 – 9,733,120
Length 120
Max. P 0.720957
window5321

overview

Window 1

Location 9,733,000 – 9,733,120
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.56
Mean single sequence MFE -34.62
Consensus MFE -29.11
Energy contribution -28.78
Covariance contribution -0.33
Combinations/Pair 1.20
Mean z-score -1.89
Structure conservation index 0.84
SVM decision value 0.40
SVM RNA-class probability 0.720957
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9733000 120 - 22407834
GUUCUACAGCAUCAGUUUGCUGGUGCUGAUCUACUUCUUCCGGGAUAACCGCAUCUUCUGGUGGGAGGCCCUCAUCCUGUUCACCAUCUACAUCGGCUACGUGGCCUUCAUGAAGUGGAA
......(((((((((....))))))))).((((((((...(((.....)))((((....))))((((((((....(((((.........)))..))....).)))))))..)))))))). ( -43.50)
>DroVir_CAF1 20250 120 - 1
AUUCUAUAGCAUCAGUUUGCUGGUAUUGAUCUACUUUUUUCGCGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUGUUUACCAUAUACAUUGCCUAUGUGACCUUCAUGAAGUGGAA
......(((((......))))).......((((((((....(((....((.((((....)))).))..))).............((((((.......))))))........)))))))). ( -26.60)
>DroGri_CAF1 20691 120 - 1
AUUCUAUAGCAUCAGUCUGCUGGUGUUGAUCUACUUUUUUCGCGACAAUCGCAUCUUUUGGUGGGAGGCGCUCAUCCUGUUUACCAUCUAUAUUGCCUAUGUGGCCUUCAUGAAGUGGAA
......(((((((((....))))))))).((((((((....((.(((...(((......(((((.(((((.......))))).))))).....)))...))).))......)))))))). ( -35.20)
>DroWil_CAF1 24200 120 - 1
AUUCUAUAGCAUCAGCCUGCUGGUAUUGAUCUACUUUUUUCGCGACAAUCGCAUCUAUUGGUGGGAGGCCCUCAUACUCUUCACCAUCUAUAUUGCCUAUGUGGCCUUCAUGAAGUGGAA
..........(((((....))))).....((((((((....((.(((...(((.....(((((((((.........))).)))))).......)))...))).))......)))))))). ( -31.30)
>DroMoj_CAF1 20997 120 - 1
AUUCUACAGCAUCAGCCUGCUGGUGCUGAUCUAUUUUUUUCGCGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUAUUUACCAUAUACAUUGCCUAUGUGACCUUCAUGAAGUGGAA
......(((((((((....))))))))).((((((((....(((....((.((((....)))).))..))).............((((((.......))))))........)))))))). ( -34.60)
>DroAna_CAF1 15538 120 - 1
CUUCUACAGUAUCAGCCUCCUGGUGCUGAUCUACUUUUUCCGGGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUUUUCACCAUCUACAUCGCCUAUGUGACCUUCAUGAAGUGGAA
......(((((((((....))))))))).((((((((....(((..............(((((..(((........)))..)))))......((((....)))))))....)))))))). ( -36.50)
>consensus
AUUCUACAGCAUCAGCCUGCUGGUGCUGAUCUACUUUUUUCGCGACAAUCGCAUCUUCUGGUGGGAGGCGCUCAUCCUGUUCACCAUCUACAUUGCCUAUGUGACCUUCAUGAAGUGGAA
......(((((((((....))))))))).((((((((....(((.....)))......((((((((((.......))).)))))))..(((((.....)))))........)))))))). (-29.11 = -28.78 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:33 2006