Locus 3356

Sequence ID 2L_DroMel_CAF1
Location 9,727,889 – 9,727,982
Length 93
Max. P 0.792314
window5320

overview

Window 0

Location 9,727,889 – 9,727,982
Length 93
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 91.85
Mean single sequence MFE -22.11
Consensus MFE -18.00
Energy contribution -17.88
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.81
SVM decision value 0.59
SVM RNA-class probability 0.792314
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9727889 93 + 22407834
CAGAGAGAUCGACGACAGUCAGAAACUUGGUUUCGAUUUGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG
.....((((((((....))).(((((...)))))))))).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -24.40)
>DroSec_CAF1 10198 92 + 1
CAGAGAGAUCGACGACAGUCAGAAACUUGGGUUCGAU-UGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG
......((((((...(((........)))...)))))-).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -21.10)
>DroSim_CAF1 9365 92 + 1
CAGAGAGAUCGACGACAGUCAGAAACUUGGGUUCGAU-UGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG
......((((((...(((........)))...)))))-).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -21.10)
>DroEre_CAF1 10200 89 + 1
CAGAGAGAUCGA---CAGUCAGAAACUUGGGCUCGAU-UGGCUGUUUGACAUACUGUCAA-AAGUGGAUGUUGAACAGUACAAAAUAUA--------UAGAG
......((((((---..(((.........))))))))-).((((((..(((((((.....-.)))..))))..))))))..........--------..... ( -21.00)
>DroYak_CAF1 10464 98 + 1
CAGAGAGAUCGA---CGGUCAGAAACUUGGGUUCGAG-UGGCUGUUUGACAUACCGUCAAAAAGUGGAUGUUGAACAGUACAAAAUAUAUAGUUUUAUAGAG
......(((...---..))).((((((...((.....-..((((((..((((.(((........)))))))..)))))).......))..))))))...... ( -22.94)
>consensus
CAGAGAGAUCGACGACAGUCAGAAACUUGGGUUCGAU_UGGCUGUUUGACAUACUGUCAA_AAGUGGAUGUUGAACAGUACAAAAUAUA________UAGAG
.......(((((...(((........)))...)))))...((((((..((((.(((........)))))))..))))))....................... (-18.00 = -17.88 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:32 2006