Locus 3352

Sequence ID 2L_DroMel_CAF1
Location 9,714,155 – 9,714,254
Length 99
Max. P 0.516509
window5315

overview

Window 5

Location 9,714,155 – 9,714,254
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 97.98
Mean single sequence MFE -19.52
Consensus MFE -16.62
Energy contribution -17.06
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.47
Structure conservation index 0.85
SVM decision value -0.03
SVM RNA-class probability 0.516509
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9714155 99 + 22407834
UUAUAUAUAUGUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGCGCGCUUU
.((((((((.(.....).)))))))).......................((((((.(......(((((((.(((.....))).))))))).).)))))) ( -19.00)
>DroSec_CAF1 5099 99 + 1
UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGUGCGCUUU
..(((((((((.......)))))))))......................((((((..((....(((((((.(((.....))).))))))))).)))))) ( -19.60)
>DroSim_CAF1 5086 99 + 1
UUAAAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGUGCGCUUU
..(((((((((((.....)))))))))))....................((((((..((....(((((((.(((.....))).))))))))).)))))) ( -20.40)
>DroEre_CAF1 5108 99 + 1
UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUGGUGUGGUGUGUGCGCUUU
..(((((((((.......)))))))))......................(((((((.((.(((.(((((..........)))))))).)).).)))))) ( -20.00)
>DroYak_CAF1 5161 99 + 1
UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGUUGUGUGCGCUUU
..(((((((((.......)))))))))......................((((((..((..((((((((...........)).)))))).)).)))))) ( -18.60)
>consensus
UUAUAUAUAUAUGUUUCUUGUAUAUAUUUCCUCUUAUUUACGUUGCUUUAAAGCGAGACUUCAACGCCAUUCGACAAUUUUGUGUGGUGUGUGCGCUUU
..(((((((((.......)))))))))......................((((((........(((((((.(((.....))).)))))))...)))))) (-16.62 = -17.06 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:27 2006