Locus 3348

Sequence ID 2L_DroMel_CAF1
Location 9,698,774 – 9,698,871
Length 97
Max. P 0.809620
window5309

overview

Window 9

Location 9,698,774 – 9,698,871
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 95.50
Mean single sequence MFE -24.03
Consensus MFE -22.17
Energy contribution -21.77
Covariance contribution -0.40
Combinations/Pair 1.10
Mean z-score -1.28
Structure conservation index 0.92
SVM decision value 0.64
SVM RNA-class probability 0.809620
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9698774 97 + 22407834
--AUGUGUGCGAGUUGAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA
--.....((((((.((..((((((....))))))...(((.......(((((((...................))))))).......))))).)))))) ( -25.05)
>DroSec_CAF1 58080 97 + 1
--AUGUGUGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA
--.....((((((.....((((((....))))))...(((.......(((((((...................))))))).......)))...)))))) ( -23.35)
>DroSim_CAF1 63891 97 + 1
--AUGUGCGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGUGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA
--......(((((.....((((((....))))))...(((.......(((((((...................))))))).......)))...))))). ( -23.55)
>DroEre_CAF1 63060 99 + 1
GCAUGUGUGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUUUGCGAUCUCUUUUCGGCGCUCUCUUCGUAGGCACUUUUCCACAUUUCGCA
((..(((((.(((.....((((.((((...(((((...((..(..(....)..)...))....)))))......)))).))))..))))))))...)). ( -24.00)
>DroYak_CAF1 58550 97 + 1
--AUGUGUGCGAGUUGAUGUGCAUAUGUAUGCGCUUCUGGGUUUACUUUUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA
--.(((.((((((..((.((((....))))(((((...(((.(..(....)..)...)))...)))))))..)))))).)))................. ( -24.20)
>consensus
__AUGUGUGCGAGUUAAUGUGCAUAUGUAUGCGCUUCUGGUUUUACUUCUGCGAUCUCUCUUCAGCGCUCUCUUCGCAGGCACUUUUCCACAUUUCGCA
........(((((.....((((((....))))))...(((.......(((((((...................))))))).......)))...))))). (-22.17 = -21.77 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:21 2006