Locus 3347

Sequence ID 2L_DroMel_CAF1
Location 9,694,514 – 9,694,608
Length 94
Max. P 0.774730
window5308

overview

Window 8

Location 9,694,514 – 9,694,608
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 77.63
Mean single sequence MFE -14.44
Consensus MFE -10.12
Energy contribution -9.90
Covariance contribution -0.22
Combinations/Pair 1.15
Mean z-score -1.32
Structure conservation index 0.70
SVM decision value 0.54
SVM RNA-class probability 0.774730
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9694514 94 + 22407834
CAACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUCCCCAC----AAUUUCUA---AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU
........((.((((...(((....))).....))))..))...((----((......---.......((((((....)).))))((....))..)))).. ( -14.40)
>DroPse_CAF1 76286 90 + 1
-------UCAAAGUUUUUCUCCGUUUAGUUUUUCACUUUUC--UACAGAAAAUUCCCAACGAAUUUUAUGCGGCAUUUGCACGCAUUUUUUGCUCUUGA--
-------(((((((.......((((....(((((.......--....))))).....))))......(((((((....)).))))).....))).))))-- ( -13.00)
>DroSec_CAF1 53832 92 + 1
CCACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUC--CAC----AAUUUCUA---AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU
........((.((((...(((....))).....))))..))--.((----((......---.......((((((....)).))))((....))..)))).. ( -14.40)
>DroSim_CAF1 59640 92 + 1
CCACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUC--CAC----AAUUUCUA---AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU
........((.((((...(((....))).....))))..))--.((----((......---.......((((((....)).))))((....))..)))).. ( -14.40)
>DroEre_CAF1 58738 92 + 1
CCACUCUCGUUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUG--CAC----AAUUUCUA---AACUUUAUGCGGCAAUCGCACGCAGCUCUUGCUUUUGUUU
........((.((((...(((....))).....))))...)--)((----((......---.......((((((....)).))))((....))..)))).. ( -15.70)
>DroPer_CAF1 76803 90 + 1
-------UCAAAGUUUUUCUCCGUUUAGUUUUUCACUUUUC--CACAGAAAAUUCCCAACGAAUUUUAUGCGGCAUUUGCACGCAUUUUUCGCUCUUGA--
-------((((...((((((......(((.....)))....--...)))))).......((((....(((((((....)).)))))..))))...))))-- ( -14.72)
>consensus
CCACUCUUGAUUGCGUUUCUGUUUUUAGUUUUUCGCAUUUC__CAC____AAUUUCUA___AACUUUAUGCGGCAUUCGCACGCAGCUCUUGCUUUUGUUU
...........((((...(((....))).....))))...............................((((((....)).))))................ (-10.12 =  -9.90 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:20 2006