Locus 3344

Sequence ID 2L_DroMel_CAF1
Location 9,684,457 – 9,684,547
Length 90
Max. P 0.938050
window5304

overview

Window 4

Location 9,684,457 – 9,684,547
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 86.92
Mean single sequence MFE -18.87
Consensus MFE -18.00
Energy contribution -18.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.95
SVM decision value 1.27
SVM RNA-class probability 0.938050
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9684457 90 - 22407834
AAACAAAAACAAAAGCUAAAGCUAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUCCACUGAAGUCCAC
.............(((....)))..................((((((((.((((....)))).))))(((.(....))))....)))).. ( -20.60)
>DroSec_CAF1 42412 80 - 1
AAAAGAAAACACA----AAAGCAAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUC------AGUCCAC
.........(((.----................((......))((((((.((((....)))).))))))))).....------....... ( -18.00)
>DroSim_CAF1 47761 78 - 1
AAAAGAAAAAACA------AGCAAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUC------AGUCCAC
.............------........((((..((......))((((((.((((....)))).))))))))))....------....... ( -18.00)
>consensus
AAAAGAAAACACA____AAAGCAAAAGUCGCCGCCAAAUGAGGACACUGGUCAUCCAGGUGAGCAGUGUGUGAAAUC______AGUCCAC
...........................((((..((......))((((((.((((....)))).))))))))))................. (-18.00 = -18.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:16 2006