Locus 3343

Sequence ID 2L_DroMel_CAF1
Location 9,677,992 – 9,678,099
Length 107
Max. P 0.621753
window5303

overview

Window 3

Location 9,677,992 – 9,678,099
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 93.30
Mean single sequence MFE -21.65
Consensus MFE -20.25
Energy contribution -19.88
Covariance contribution -0.38
Combinations/Pair 1.08
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value 0.18
SVM RNA-class probability 0.621753
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9677992 107 - 22407834
GUUGAUAUAAUUUCAUUUGAUCAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGUAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU
(((....((((((.(((((((((((......))))))))))).)))))).((((.((((((((((..(((......)))...))))))))))....))))))).... ( -21.90)
>DroSec_CAF1 35980 107 - 1
GUUGAUAUAAUUUCAUUUGAUUAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGCAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU
(((....((((((.(((((((((((......))))))))))).)))))).((((.(((((((((((((.....)))......))))))))))....))))))).... ( -20.20)
>DroSim_CAF1 40868 107 - 1
GUUGAUAUAAUUUUAUUUGAUUAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGUAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU
(((....((((((.(((((((((((......))))))))))).)))))).((((.((((((((((..(((......)))...))))))))))....))))))).... ( -19.70)
>DroYak_CAF1 37192 107 - 1
GUUGAUUCAAUUUCAUUUGAUCGGGCUAUACUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGUAAUUCAUAUAUUUAAUAAUAGCGAUUUUCUAAGGGCAAGC
(((((((((((((.....(((((((......)))))))))))))))))))).....(((((.((((.((.((...((((....))))..)).)).)))).))))).. ( -24.80)
>consensus
GUUGAUAUAAUUUCAUUUGAUCAGGUUACGGUUUGAUCGAAUUGAAUUAACUUACAUUGUUGUUAGCAAUUCAUGUAUUUAAUAAUAGCAAUUUUCUAAGGGCAAGU
(((....((((((.(((((((((((......))))))))))).)))))).((((.((((((((((..(((......)))...))))))))))....))))))).... (-20.25 = -19.88 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:15 2006