| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,673,833 – 9,673,944 |
| Length | 111 |
| Max. P | 0.814865 |
| Location | 9,673,833 – 9,673,944 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -13.61 |
| Energy contribution | -14.58 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9673833 111 + 22407834 CUCAUAAAAUGCGGUAGCAAUAAAUAAUUGCAACAUUAUUAUUUAUGCGAGGCAUAUGUCGGUGGAA-AAAAGUGAGCAGCGGGGGAGAAAACAUCAAAAACCGCAAAAUGA .((((....(((.((.(((((.....))))).)).(((((.(((.(((..(((....))).)))..)-)).))))))))((((..((.......)).....))))...)))) ( -20.90) >DroSec_CAF1 31994 110 + 1 UCCAUAAAAUGCGAUAGAAAUAAAUAAUUGCAACAUUAUUAUUUAUGCGAGGCAUAUGCCGGAGAAAAAAAAGUGAGCAGCGGGGG--AAAACAUCAAAAACUGCAAAAUGA (((......((((((...........))))))..................(((....)))))).............((((.....(--(.....)).....))))....... ( -17.20) >DroSim_CAF1 36776 109 + 1 CCCAUAAAAUGCGGUAGCAAUAAAUAAUUGCAACAUUAUUAUUUAUGCGAGGCAUAUGCCGGAGAAA-AAAAGUGAGCAGCGGGGG--AAAGCAUCAAAAACCGCAAAAUGA .........((((((.(((.((((((((.........)))))))))))(((((....))).......-...........((.....--...)).))....))))))...... ( -23.60) >DroEre_CAF1 37721 95 + 1 CCCAUAAAAUGCGGUGGCAAUAAAUAAUUGCAACAAUAUUAUUUAUGCGAGGCAUAUGCCGGAGGAA--AAAGUGAG---------------CAUCUCAAACCGCAAAAUGA .........((((((.(((.((((((((.........)))))))))))..(((....))).......--....((((---------------...)))).))))))...... ( -22.10) >DroYak_CAF1 32340 107 + 1 CCCAUAAAAUGUGGUAGCAAUAAAUAAUUGCAACAUUAUUAUUUAUGCGAGGCAUAUGCCAGCGGAA--AAAGCGAGCAGUGGG-G--AAAGCAUCUCAAACCGCAAAAUGA .........((((((.(((((.....)))))..............(((..(((....))).((....--...))..)))...((-(--(.....))))..))))))...... ( -24.10) >DroAna_CAF1 35103 85 + 1 UCCAUAAAAUUCGGGAGCAAUAAAUAAUUGCAACAUUAAUAUUUAUGCUCGCCAUAUGCCAGCGAAA--AAUG--A-------------------CUUAAGACCCAAU---- ............(((.(((((.....)))))..........(((.((((.((.....)).)))).))--)...--.-------------------.......)))...---- ( -15.00) >consensus CCCAUAAAAUGCGGUAGCAAUAAAUAAUUGCAACAUUAUUAUUUAUGCGAGGCAUAUGCCGGAGAAA__AAAGUGAGCAGCGGG_G__AAA_CAUCAAAAACCGCAAAAUGA .........((((((.(((.((((((((.........)))))))))))..(((....)))........................................))))))...... (-13.61 = -14.58 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:12 2006