Locus 3340

Sequence ID 2L_DroMel_CAF1
Location 9,670,749 – 9,670,846
Length 97
Max. P 0.800237
window5299

overview

Window 9

Location 9,670,749 – 9,670,846
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 97.11
Mean single sequence MFE -19.88
Consensus MFE -19.46
Energy contribution -19.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.98
SVM decision value 0.61
SVM RNA-class probability 0.800237
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9670749 97 + 22407834
AAUUUUAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGUGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA
..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). ( -20.00)
>DroSec_CAF1 28956 97 + 1
AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA
..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). ( -19.30)
>DroSim_CAF1 30020 97 + 1
AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUGGCUGUCAUUUGGCCAAAGUAA
..........((((((.....((((((((.((.((.((.....)).)).)).))))))......((((((....))))))......))..)))))). ( -19.30)
>DroEre_CAF1 34710 97 + 1
AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGCGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA
..........((((((.......((((((.((..(((.....)))....)).)))))).......(((((.((........))..))))))))))). ( -21.10)
>DroYak_CAF1 29253 97 + 1
AAUUUCCAAAUAUUUUUAGAUCCAACUGACAGUUGCGUUCGGUGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA
..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). ( -19.70)
>consensus
AAUUUCAAAAUAUUUUUAGAUCCAACUGACAGUUGUGUUCUGCGCUCACCUUUCAGUUAUUACCCGGCCAUUGUUAGCUGUCAUUUGGCCAAAGUAA
..........((((((.......((((((.((.((.((.....)).)).)).)))))).......(((((.((........))..))))))))))). (-19.46 = -19.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:11 2006