Locus 334

Sequence ID 2L_DroMel_CAF1
Location 1,009,887 – 1,009,995
Length 108
Max. P 0.888934
window529 window530

overview

Window 9

Location 1,009,887 – 1,009,995
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -23.27
Consensus MFE -23.27
Energy contribution -23.27
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 1.00
SVM decision value 0.95
SVM RNA-class probability 0.888934
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1009887 108 + 22407834
GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU
.(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... ( -23.27)
>DroSec_CAF1 121620 108 + 1
GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU
.(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... ( -23.27)
>DroSim_CAF1 122184 108 + 1
GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU
.(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... ( -23.27)
>consensus
GGUAUCGUUUAAUUUACAUUUAUAUAAUUUACACAUGCAGCAGAAUAUAAUAUGUUUGUGAUUUAAACUUGAAUCUGUAGCGCAUAUUACACAAUGGCGCGAUACAUU
.(((((((((((.(((((..(((((.((..................)).)))))..))))).))))))...........((((.((((....)))))))))))))... (-23.27 = -23.27 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 1,009,887 – 1,009,995
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -20.30
Consensus MFE -20.30
Energy contribution -20.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 1.00
SVM decision value 0.56
SVM RNA-class probability 0.783241
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1009887 108 - 22407834
AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC
...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). ( -20.30)
>DroSec_CAF1 121620 108 - 1
AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC
...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). ( -20.30)
>DroSim_CAF1 122184 108 - 1
AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC
...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). ( -20.30)
>consensus
AAUGUAUCGCGCCAUUGUGUAAUAUGCGCUACAGAUUCAAGUUUAAAUCACAAACAUAUUAUAUUCUGCUGCAUGUGUAAAUUAUAUAAAUGUAAAUUAAACGAUACC
...((((((((.((..((((((((((.......((((........)))).....))))))))))..)).)))..((.(((.(((((....))))).))).))))))). (-20.30 = -20.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:16 2006