| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,637,225 – 9,637,327 |
| Length | 102 |
| Max. P | 0.767304 |
| Location | 9,637,225 – 9,637,327 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.73 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.35 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9637225 102 + 22407834 -GCAAU-ACCAGGCCAUUUCCUAUUCGUUAUACUC-UUUUUUACCCACCUGCC-UUGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -.....-...(((......))).............-.............((((-..(((.(((.(((((...--------------..))))).)))...)))...)))).......... ( -17.00) >DroSec_CAF1 37768 103 + 1 -GCAAU-CCCAGGCCAUUUCCUAUUCGUUAUACUCCAUUUUUACCCGCCUGCC-AUGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUAGCAAUUUUAAUCU -((...-..(((((................................)))))..-..(((.(((.(((((...--------------..))))).)))...)))....))........... ( -16.05) >DroSim_CAF1 37068 103 + 1 -GCAAU-CCCAGGCCAUUUCCUAUUCGUUAUACUCCUUUUUUACCCACCUGCC-AUGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -.....-...(((......)))...........................((((-(.(((.(((.(((((...--------------..))))).)))...)))..))))).......... ( -17.50) >DroEre_CAF1 39957 86 + 1 CGCAAU-CCCAG---------------UUUUACUC-UUUUU--CCCAUCUGCC-UCGGCAAUUCUCAGUUUG--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU ......-.....---------------........-.....--......((((-..(((.(((.(((((...--------------..))))).)))...)))...)))).......... ( -15.30) >DroYak_CAF1 39484 116 + 1 -GCAAU-CCCAGUCGAUUUCCCAUUCGUUUUACUC-UUUUUUCCCCACCUGCC-UUGGCAAUUCUCAGUUUGCAGUGUGCAGAUUGCAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -.....-......(((........)))........-.............((((-..(((.(((.((((((.(((((......))))))))))).)))...)))...)))).......... ( -23.70) >DroAna_CAF1 49973 101 + 1 -GCAUUUCCCAACCCAU-CGUUGCUCAAUUUCCAC-U--UUUUCACACCUGCCCUUGCCAGUUCUCAGUUUA--------------CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU -........((((....-.))))............-.--...............(((((((...(((((...--------------..)))))...........)))))))......... ( -13.54) >consensus _GCAAU_CCCAGGCCAUUUCCUAUUCGUUAUACUC_UUUUUUACCCACCUGCC_UUGGCAAUUCUCAGUUUG______________CAGCUGAAAAUCACGCCUCUGGCAAUUUUAAUCU .................................................((((...(((.(((.((((((.................)))))).)))...)))...)))).......... (-12.15 = -12.35 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:55 2006