Locus 3329

Sequence ID 2L_DroMel_CAF1
Location 9,636,666 – 9,636,786
Length 120
Max. P 0.995140
window5282

overview

Window 2

Location 9,636,666 – 9,636,786
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.89
Mean single sequence MFE -27.37
Consensus MFE -24.80
Energy contribution -25.32
Covariance contribution 0.52
Combinations/Pair 1.06
Mean z-score -2.32
Structure conservation index 0.91
SVM decision value 2.55
SVM RNA-class probability 0.995140
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9636666 120 + 22407834
AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG
...((((.......(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))).......)))).. ( -29.64)
>DroSec_CAF1 37211 120 + 1
AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG
...((((.......(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))).......)))).. ( -29.64)
>DroSim_CAF1 36495 120 + 1
AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG
...((((.......(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))).......)))).. ( -29.64)
>DroEre_CAF1 39440 120 + 1
AACGCUUAAACCAAAUUUACAUAAUAGUUCUUCUUACCGUUCACUGCAAAUGUGCCAAAGAGCAACUGGCAUCAGAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG
......(((((...((((.((((((.((.......)).(((((((.....(((((((.........))))).)).......)))))))........)))))).)))))))))........ ( -20.30)
>DroYak_CAF1 39027 120 + 1
AACGCUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAGAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG
......(((((...(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))))))))........ ( -28.80)
>DroAna_CAF1 49405 101 + 1
AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUU------------------UGAGGGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGC-GAACUG
..(((..((((...((((((((((((((((((((..------------------...))))).))))((((......((.....))....))))..)))))))))))))))))-)..... ( -26.20)
>consensus
AACGUUUAAACCAAAUUUGCAUAAUAGUUCUUCUUUCCGUUCACUGCAAAUGUGCGAAAGAGCAACUGGCAUCAAAAUCUAAGUGAGCAUUGCCAAAUUAUGCAAAUGUUUGCCAAACUG
......(((((...(((((((((((((((.(((((((....(((.......))).))))))).))))((((......((.....))....))))..))))))))))))))))........ (-24.80 = -25.32 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:54 2006