| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,634,811 – 9,634,917 |
| Length | 106 |
| Max. P | 0.982620 |
| Location | 9,634,811 – 9,634,917 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 88.69 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.12 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.92 |
| SVM RNA-class probability | 0.982620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9634811 106 - 22407834 GCACA---------UUUAAUAUGUCAAUUCAUAGUUUCACUGCAAAACAUUUCACAAGAAGAGUAAAUAAGACAGUUUGA-AACUGAGAGAUCUUUCUCUGCUCUUCCUCGACAGU .....---------.......((((........((((.......)))).........(((((((........((((....-.))))(((((....))))))))))))...)))).. ( -21.90) >DroSec_CAF1 35427 102 - 1 ----A---------UUUAAUAUGUCAAUUCAUAGUUUCACUGCAAAACAUUUCACAAGAAGAGUAAAUAUGACAGUCUGA-AACUGAGAGAUCUUUCUCUGCUCUUCCUCGACAGU ----.---------.......((((........((((.......)))).........(((((((........((((....-.))))(((((....))))))))))))...)))).. ( -21.80) >DroSim_CAF1 34716 102 - 1 ----A---------UUUAAUAUGUCAAUUCAUAGUUUCACUGCAAAACAUUUCACAAGAAGAGUAAAUAUGACAGUCUGA-AACUGAGAGAUCUUCCUCUGCUCUUCCUCGACAGU ----.---------.......((((........((((.......)))).........(((((((........((((....-.))))((((......)))))))))))...)))).. ( -20.00) >DroEre_CAF1 37574 107 - 1 ACACA---------CUUAAUCUGUCAAUUCAUUGUUUCACUGCAAAACAUUUCACAAGAAGAGUAAACAAGACAGUCUGAAAACUGAGAGAUUUUCCUCUGCUCUUCCUCGACAGU .....---------......(((((......((((......))))............(((((((........((((......))))((((......)))))))))))...))))). ( -23.70) >DroYak_CAF1 37195 115 - 1 GCACAUAUAGCACGUAUAAUCUGUUAAUUCAUAGUUUCACUGCAAAACAUUUCACAAGCAGAGUAAAUAAGACAGUCAGA-AACUGAGAGAUUUUGCUCUGCUCUUCCUCGACAGU ((.......)).........(((((........((((.......))))........(((((((((((.....((((....-.))))......))))))))))).......))))). ( -22.50) >consensus _CACA_________UUUAAUAUGUCAAUUCAUAGUUUCACUGCAAAACAUUUCACAAGAAGAGUAAAUAAGACAGUCUGA_AACUGAGAGAUCUUCCUCUGCUCUUCCUCGACAGU .....................((((........((((.......)))).........(((((((........((((......))))((((......)))))))))))...)))).. (-19.08 = -19.12 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:51 2006