Locus 3325

Sequence ID 2L_DroMel_CAF1
Location 9,630,253 – 9,630,372
Length 119
Max. P 0.919985
window5276

overview

Window 6

Location 9,630,253 – 9,630,372
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.23
Mean single sequence MFE -28.59
Consensus MFE -21.87
Energy contribution -22.67
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.77
SVM decision value 1.13
SVM RNA-class probability 0.919985
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9630253 119 + 22407834
UUUUUAAAGGACCUAAUUUUAAUAGCUCCUCAGUCCUUUGCCCAUAAUUAGCGU-CCCUUUAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACUU
........................((((((..(((....((((((((.......-..........))))))))....................((....))..))).))))))....... ( -26.53)
>DroSec_CAF1 30888 119 + 1
UUUUUAAAGGACAUAAUUUGAAUAGCUCCUCAGUCCUUUUCCCAUAAUUAGCGA-CCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACCU
.......(((.((.....))....((((((..(((((((((((((((.....((-....))....)))))(((((((....)))).))).....))))).)).))).))))))....))) ( -26.50)
>DroSim_CAF1 30127 119 + 1
UUUUUAAAGGACAUAAUUUUAAUAGCUCCUCAGUCCUUUGCCCAUAAUUAGCGA-CCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACCU
........................((((((..(((....((((((((.....((-....))....))))))))....................((....))..))).))))))....... ( -26.60)
>DroEre_CAF1 33036 119 + 1
UGUUUUAGGGACAUCAUUUGCAGAGCUCC-CAUUUUCUUGCCCAUAAUUAGCGACCCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAGUGGAAACACGGGCAAGGAGCAAUACCU
......((((.((.....)))...(((((-((.((....((((((((.....((.....))....))))))))....)).))...((((...(((....))).)))).)))))....))) ( -34.80)
>DroYak_CAF1 32469 120 + 1
UUUUUGAAGGACACAAUUUUAAUAGCUCCUCAUUUUGUUGCCCAUAAUUAGCGAGCCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGGCAAAAUGAAAACAGCGACAAGGAGCAAUACCU
........................((((((.....((((((((((((((((.((((((...........))))))))))))...)))).....((....))))))))))))))....... ( -28.50)
>consensus
UUUUUAAAGGACAUAAUUUUAAUAGCUCCUCAGUCCUUUGCCCAUAAUUAGCGA_CCCUUCAACUUUAUGGGCUUUUAAUUGAAAUGCCAAAAUGGAAACAGCGACAAGGAGCAAUACCU
........................((((((((((.....((((((((..................)))))))).....)))))..........((....)).......)))))....... (-21.87 = -22.67 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:48 2006