Locus 3323

Sequence ID 2L_DroMel_CAF1
Location 9,624,104 – 9,624,205
Length 101
Max. P 0.790472
window5273

overview

Window 3

Location 9,624,104 – 9,624,205
Length 101
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 79.73
Mean single sequence MFE -25.52
Consensus MFE -13.08
Energy contribution -15.32
Covariance contribution 2.24
Combinations/Pair 1.05
Mean z-score -2.14
Structure conservation index 0.51
SVM decision value 0.58
SVM RNA-class probability 0.790472
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9624104 101 + 22407834
AACGGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAGCCGCCCUGGGG-ACCAGGCUAACGCCAUCAAUCCUCCCAUUUAAUGCCCGUUCCCAU-
...((.(((((...((((((((..................(((((.....))))).-....(((....))).............))))))))))))).))..- ( -28.50)
>DroSec_CAF1 24690 101 + 1
AACGGCGAGGGCCCGCAUUAGGCCAUUAAAGCUAAUUAAACCCAGCCGCCCUGGGG-CCCAGGCUAACGCCAUCAAUCCUCCCAUUUAAUGCCCGUUCCCAU-
(((((((.((((((((.((((....)))).))..........(((.....))))))-))).(((....)))..................)).))))).....- ( -30.20)
>DroSim_CAF1 23913 79 + 1
AACGGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAGCCGCCCCGGGG-CCCAGGCUA----------------------AUGCCCGUUACCAU-
...((..((((...((((((.(((......(((..........))).(((....))-)...)))))----------------------))))))))..))..- ( -25.60)
>DroEre_CAF1 26964 92 + 1
----------GCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAUCCGCCCUGGGGGCCCAGGCUAACGCCAUCAAUCCACCCGUUUAAUACCCAUUCCCAG-
----------....((.((((....)))).))..(((((((......((((...))))...(((....)))............)))))))............- ( -18.50)
>DroYak_CAF1 26050 103 + 1
AACAGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAAGCCAGCCGCCCUGGGCUCGCAGGCUAGCGCCAUCAGUCCGCCCAUUUAAUACCCAUUCCCAUA
......((((((..((....((((.((((......)))).((.((((......)))).)).)))).))))))))............................. ( -24.80)
>consensus
AACGGCGAUGGCCCGCAUUAAGCCAUUAAAGCUAAUUAAACCCAGCCGCCCUGGGG_CCCAGGCUAACGCCAUCAAUCCUCCCAUUUAAUGCCCGUUCCCAU_
....(((.(((((.((.((((....)))).))........(((((.....)))))......))))).)))................................. (-13.08 = -15.32 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:45 2006