Locus 3320

Sequence ID 2L_DroMel_CAF1
Location 9,592,315 – 9,592,413
Length 98
Max. P 0.546943
window5270

overview

Window 0

Location 9,592,315 – 9,592,413
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.54
Mean single sequence MFE -22.82
Consensus MFE -14.20
Energy contribution -14.73
Covariance contribution 0.53
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.62
SVM decision value 0.03
SVM RNA-class probability 0.546943
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9592315 98 + 22407834
AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAUA----UAUGUAUGUAUAU--CCCACAAAAAGGUGGGCAAGUCAA
..(((.......)))((((..(((((..(((((((.((...((((....)))).)).))))----.)))..)))))..--(((((......)))))..)))).. ( -26.40)
>DroVir_CAF1 3295 76 + 1
UGAGCAAACA--UU----UAACUAUACGCAUUGUGCCGUAUUCUCUUUUGGGACAA--------------------AG--GCCACAAAAAGGUGGGCAAGUCAA
.........(--((----(..((((.....(((((((....((((....))))...--------------------.)--).)))))....))))..))))... ( -14.70)
>DroSec_CAF1 2628 92 + 1
AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU----------AUGUAUAU--CCCACAAAAAGGUGGGCAAGUCAA
..(((.......)))((((..((((((((.....)).....((((....)))).......----------..))))))--(((((......)))))..)))).. ( -24.10)
>DroSim_CAF1 2642 92 + 1
AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU----------AUGUAUAU--CCCACAAAAAGGUGGGCAAGUCAA
..(((.......)))((((..((((((((.....)).....((((....)))).......----------..))))))--(((((......)))))..)))).. ( -24.10)
>DroEre_CAF1 2588 94 + 1
AAGGCAAA--CAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU--------AUACAUAUAUAGCCCACAAAAAGGUGGACAAGUCAA
..(((...--..)))((((..(((((.((.....)).....((((....))))......)--------)))).......(.((((......)))).).)))).. ( -21.30)
>DroYak_CAF1 2641 99 + 1
AAGGCAAA--CAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAUACGAGUAUAUACAUAUAUA--CCACA-AAAGGUGGGCAAGUCAA
..(((...--..)))((((..(((((..(.(((((..((..((((....))))..))..))))))..))))).......--((((.-....))))...)))).. ( -26.30)
>consensus
AAGGCAAACACAGUCGACUAAGUAUACGCAUUGUGCCUUAUUCCCUUUUGGGACAGAUAU__________AUGUAUAU__CCCACAAAAAGGUGGGCAAGUCAA
((((((......((...........))......))))))..((((....))))............................((((......))))......... (-14.20 = -14.73 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006