Locus 332

Sequence ID 2L_DroMel_CAF1
Location 1,007,982 – 1,008,077
Length 95
Max. P 0.933208
window525

overview

Window 5

Location 1,007,982 – 1,008,077
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.36
Mean single sequence MFE -35.32
Consensus MFE -29.26
Energy contribution -29.46
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.83
SVM decision value 1.23
SVM RNA-class probability 0.933208
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1007982 95 + 22407834
AACCACCUUUUUUUUCGAGGCGUCGC----------------------GUCGCUGCUCUGCCGCAGCUGGC---GGCGUAUAAAAUUGGCUGUGACCCGAUUAUAUAUGCCGGUAUAUGU
.(((.((((.......))))......----------------------((((((((......))))).)))---((((((((.((((((.......)))))).)))))))))))...... ( -32.70)
>DroSec_CAF1 119753 93 + 1
AACCACCUUU--UUUCGAGGCGUCGC----------------------GUCGCUGCUCUGCCGCAGCUGGC---GGCGUAUAAAAUUGGCUGUGACCCGAUUAUAUAUGCCGGUAUAUGU
.(((.((((.--....))))......----------------------((((((((......))))).)))---((((((((.((((((.......)))))).)))))))))))...... ( -33.00)
>DroSim_CAF1 120330 93 + 1
AACCACCUUU--UUUCGAGGCGUCGC----------------------GUCGCUGCUCUGCCGCAGCUGGC---GGCGUAUAAAAUUGGCUGUGACCCGAUUAUAUAUGCCGGUAUAUGU
.(((.((((.--....))))......----------------------((((((((......))))).)))---((((((((.((((((.......)))))).)))))))))))...... ( -33.00)
>DroEre_CAF1 124910 102 + 1
AACCACCUUU--UUUCGAGGCGUCGCUGCU----------------CUGCCGCUCCUCUGCCGCUGCUGGCGGCGGCGUAUGAAAUUGGCUGUGACCCGAUUAUAUAUGCCGGUAUAAGU
.(((......--....((((.((.((....----------------..)).)).)))).(((((.....)))))((((((((.((((((.......)))))).)))))))))))...... ( -40.10)
>DroYak_CAF1 126846 115 + 1
AACCACCUUU--UUUCGAGGCGUCGCUGCUCUGCUCAGUCUCUGCUCUGCCGCUGCUCUGCCGCUGCUGGC---GGCGUAUAAAAUUGGCUGUGACCCGAUUAUAUAUGCCGGUAUAUGU
.(((......--....(((((...((......))...)))))......(((((.((......)).)).)))---((((((((.((((((.......)))))).)))))))))))...... ( -37.80)
>consensus
AACCACCUUU__UUUCGAGGCGUCGC______________________GUCGCUGCUCUGCCGCAGCUGGC___GGCGUAUAAAAUUGGCUGUGACCCGAUUAUAUAUGCCGGUAUAUGU
.(((.((((.......))))............................((((((((......))))).)))...((((((((.((((((.......)))))).)))))))))))...... (-29.26 = -29.46 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:11 2006