Locus 3317

Sequence ID 2L_DroMel_CAF1
Location 9,586,671 – 9,586,767
Length 96
Max. P 0.700063
window5267

overview

Window 7

Location 9,586,671 – 9,586,767
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.33
Mean single sequence MFE -31.82
Consensus MFE -22.60
Energy contribution -22.85
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -2.63
Structure conservation index 0.71
SVM decision value 0.35
SVM RNA-class probability 0.700063
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9586671 96 + 22407834
UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCCAUUGUAAAAACUCUAAA
...((((.(((------------(((((((((.....)))))))).))))))))..(((((((((((........))))....((((....))))...)))))))... ( -31.00)
>DroSec_CAF1 14581 96 + 1
UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAUGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUAUUGUAAAACCUCUAAA
......(((.(------------(((((((((.....))))))))))....((((((((...(((((........))))))))))))).............))).... ( -32.40)
>DroSim_CAF1 14271 96 + 1
UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUACUGUAAAACCUCUAAA
...((((.(((------------(((((((((.....)))))))).)))))))).((((.(((((..((((..((((.....))))..))))..))))).)))).... ( -33.70)
>DroEre_CAF1 14755 96 + 1
UUUAUUGGGAU------------UCGGGGUGGAGCCACUGCCUCCGAGUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUAUUGUAAAACCUCUGGA
.......((((------------((((((..(.....)..)).))))))))....((((.(((((..((((..((((.....))))..))))..))))).)))).... ( -36.50)
>DroYak_CAF1 15161 96 + 1
UUUAUUGAGAU------------UGGGGGUAGAGCCACUGCCUCCGAAUGAAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUGCGAUUGUAAAACCUCUAGA
......(((.(------------(((((((((.....))))))))))....(((((..(((.(((((........))))).))).....))))).......))).... ( -30.50)
>DroAna_CAF1 54419 97 + 1
UUUAUUGAGUUUUUUCCCUGUUUUGGGGGUAGA----CUGCCGC------CAAUUGAGGGUUUGCCCAAGGCCUUGUGCACAUCAAUUCUUGUUGUAC-GCCUUAAAA
......(.((.....((((...((((.(((...----..))).)------)))...))))...)).)(((((...(((((((........)).)))))-))))).... ( -26.80)
>consensus
UUUAUUGAGAU____________UGGGGGUAGAGCCACUGCCUCCGAAUCCAAUUGAGGGUUUGCCCUAGGCCUUGGGCACAUCAAUUCCUAUUGUAAAACCUCUAAA
......(((...............((((((((.....))))))))......((((((.....(((((........)))))..)))))).............))).... (-22.60 = -22.85 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:39 2006