Locus 3315

Sequence ID 2L_DroMel_CAF1
Location 9,581,675 – 9,581,775
Length 100
Max. P 0.539779
window5265

overview

Window 5

Location 9,581,675 – 9,581,775
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 87.33
Mean single sequence MFE -34.72
Consensus MFE -30.35
Energy contribution -31.88
Covariance contribution 1.53
Combinations/Pair 1.03
Mean z-score -1.41
Structure conservation index 0.87
SVM decision value 0.01
SVM RNA-class probability 0.539779
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9581675 100 - 22407834
GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGA--AGAAGUAC
.....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......))))))).--........ ( -36.10)
>DroSec_CAF1 9718 100 - 1
GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGA--AGACGUAC
.....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......))))))).--........ ( -36.10)
>DroSim_CAF1 9368 100 - 1
GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGA--AGACGUAC
.....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......))))))).--........ ( -36.10)
>DroEre_CAF1 9907 90 - 1
UCCAACUUAACUGGGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUCGA------------
..(.((((..(((((((((((((.((.(((.......))).)).)))))))))(((((((......)))))))..))---))....)))).).------------ ( -35.30)
>DroYak_CAF1 9901 102 - 1
GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC---AGAGAAAAGUUGAGAAAAGAAUUGC
.....(((((((..(((((((((.((.(((.......))).)).)))))))))(((((((......)))))))....---.......)))))))........... ( -36.10)
>DroAna_CAF1 49791 93 - 1
AGCAACUUAACUGAUCUGCGCACAGCGGGACCAGUUAGUCAGCCUUGCGCAGUCGAAGCGAACGGACGCGUCGCUCUUCGAGAAAAAAACGAA------------
...............(((((((..((..(((......))).))..)))))))(((((((((.((....)))))))..))))............------------ ( -28.60)
>consensus
GGCAACUUAACUGUGCUGCGCAGAGCGGGCCCAGUUAGUCAGCCUUGCGCAGUCGAUGCGAACGGACGCGUCGCUCC___AGAGAAAAGUUGAGA__AGA_GUAC
.....(((((((..((((((((..((.(((.......))).))..))))))))(((((((......)))))))(((.....)))...)))))))........... (-30.35 = -31.88 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:37 2006