| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,581,053 – 9,581,155 |
| Length | 102 |
| Max. P | 0.863176 |
| Location | 9,581,053 – 9,581,155 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -19.84 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9581053 102 - 22407834 AACUAACUCGGUAUUUUUAUUUUU-UUUUCUUGACAGAAAUUGCAAUGGUCGCUUGGAAAUCCAGGCUUGCCGCGGCCACUGCGGCUAUCCAGUGACCCACUU .........(((............-.(((((....))))).......((((((((((....))))))..(((((((...)))))))........)))).))). ( -28.00) >DroVir_CAF1 13401 96 - 1 CUCUAACGUAAAUUUG-UAUUGAU-U----C-UUUAGAAACUGCAAUGGACGCCUGGAGAUACAGCCGUGCCGCGGCCACUGCGGCUAUCCGGUCACACACUU (((((.(((....(((-((..(.(-(----(-....))).))))))...)))..))))).....((((.(((((((...)))))))....))))......... ( -25.80) >DroSec_CAF1 9101 97 - 1 AACUAACUCGGUAUUU-----UAU-UUUUCUUGACAGAAAUUGCAAUGGUCGCUUGGAAAUCCAGGCCUGCCGCGGCCACUGCGGCUAUCCAGUGACCCACUU .........(((....-----...-.(((((....))))).......((((((((((....)))((...(((((((...)))))))...))))))))).))). ( -27.80) >DroEre_CAF1 9289 97 - 1 AACUAACUAGAUAUUU-----CUU-UCCUUCUGACAGAAAUUGCAAUGGUCGCCUGGAGAUCCAGGCCUGCCGCGGCCACUGCGGCUACCCGGUGACCCACUU .........(..((((-----((.-((.....)).))))))..)...((((((((((....)))((...(((((((...)))))))...)))))))))..... ( -32.80) >DroYak_CAF1 9267 98 - 1 AACUAACUCAGUAUUU-----UUCAUUUAUUUAACAGAAAUUGCAAUGGACGCUUGGAGAUCCAGGCCUGCCGCGGCCACUGCGGCUAUCCAGUGACCCACUU .......((((((..(-----(((............)))).)))..((((.((((((....))))))..(((((((...)))))))..)))).)))....... ( -26.90) >DroAna_CAF1 49184 93 - 1 AACUAACUU----UUU-----AAC-UUUAAUUUAUAGAAACUGCAACGGACGCUUGGAGAUCCAACCCUGCCGUGGACAUUGCGGCUACCCAGUCACCCACUU .........----...-----...-.......................(((..((((....))))....((((..(...)..))))......)))........ ( -14.50) >consensus AACUAACUCGGUAUUU_____UAU_UUUUCUUGACAGAAAUUGCAAUGGACGCUUGGAGAUCCAGGCCUGCCGCGGCCACUGCGGCUAUCCAGUGACCCACUU ..............................................(((..((((((....))))))..(((((((...)))))))...)))........... (-19.84 = -19.70 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:36 2006