| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,571,268 – 9,571,374 |
| Length | 106 |
| Max. P | 0.991227 |
| Location | 9,571,268 – 9,571,374 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.09 |
| Mean single sequence MFE | -19.83 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.991227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9571268 106 + 22407834 UAUAUAAAUACAUAUGUAUGUAUGGUACAUACAUACAUCGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACUUAACUUGAAGUUGCCAUUUCUUGAGAU ..............((((((((((...))))))))))((((((((....)))).............((((((((.(((((......)))))))))))))))))... ( -26.10) >DroSec_CAF1 21556 84 + 1 UAUAUAAAUAUG-----------------UACGCACAUAGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACGUAACUUCAAGUUGCCAUGUCUU----- .......(((((-----------------...((((.(((((......)))))...........(((((((.((....)).)))))))).))))))))...----- ( -15.70) >DroYak_CAF1 22932 83 + 1 UGUAUAUAUAU-----------------------ACAUAGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACGAAACUUCAAGUUGCCAUUUCUUGGGCA (((((....))-----------------------)))(((((......)))))...........(((((((..(....)..)))))))..((((........)))) ( -17.70) >consensus UAUAUAAAUAU__________________UAC__ACAUAGAUAGGAAAGUCUAAAAAUCAAAUAUUGGAGUGGCUAACGUAACUUCAAGUUGCCAUUUCUUG_G__ .....................................(((((......))))).............((((((((.(((..........)))))))))))....... (-12.20 = -12.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:32 2006