Locus 3308

Sequence ID 2L_DroMel_CAF1
Location 9,555,611 – 9,555,710
Length 99
Max. P 0.549629
window5254

overview

Window 4

Location 9,555,611 – 9,555,710
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.14
Mean single sequence MFE -36.55
Consensus MFE -22.27
Energy contribution -22.13
Covariance contribution -0.14
Combinations/Pair 1.21
Mean z-score -1.42
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.549629
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9555611 99 - 22407834
GGUCCCAAGCACCAGGGCGCCUACGCCGGAGCCUGGAACUAUGGCUUCGAGGUGUCCGGAUCGUACAUCUGGCCCAGGUGAGUGUGG----CACACUUGUGUA
.(((.((..((((.((((((((....(((((((.........)))))))))))))))((..((......))..)).))))..)).))----)(((....))). ( -40.60)
>DroVir_CAF1 9984 83 - 1
GGCCCCAAGCACCAGGGCGCCUAUGCAGGUGCCUGGAACUAUGGCUUUGAGGUAUCCGGAUCGUACAUUUGGCCCAGGUGAGU--------------------
((((...((..(((((.(((((....))))))))))..))..))))......((((.((..((......))..)).))))...-------------------- ( -26.70)
>DroGri_CAF1 10444 94 - 1
GGCCCCAAACAUCAAGGCGCCUAUGCCGGCGCCUGGAACUACGGCUUUGAGGUAUCCGGAUCGUACAUAUGGCCCAGGUACGUUUUA----AGCUUAA-----
...........((.(((((((......))))))).)).....(((((.((.(((((.((..(((....)))..)).))))).))..)----))))...----- ( -32.40)
>DroEre_CAF1 6582 94 - 1
GGUCCCAAGCACCAGGGCGCCUACGCCGGCGCCUGGAACUACGGCUUCGAGGUGUCCGGAUCGUACAUCUGGCCCAGGUGAGUGGGA----GCUACUC-----
(.(((((..((((.((((...(((((((((((((.((((....).))).))))).))))..))))......)))).))))..)))))----.).....----- ( -48.10)
>DroMoj_CAF1 13664 94 - 1
GGGCCGAAGCAUCAGGGCGCGUAUGCUGGCGCCUGGAAUUAUGGCUUUGAAGUAUCCGGAUCGUACAUUUGGCCCAGGUAACUAUAC----AACAUUU-----
((((((((...((.((((((........)))))).))..(((((.((((.......)))))))))..))))))))............----.......----- ( -29.30)
>DroAna_CAF1 6780 98 - 1
GGUCCUAAGCACCAGGGCGCCUACGCCGGAGCCUGGAACUACGGCUUCGAGGUCUCCGGCUCGUACAUCUGGCCCAGGUGAGUUCCAAAGAGGCAUUC-----
.(((((.......)))))((((..((((((((((.((((....).))).))).))))))).....((((((...))))))..........))))....----- ( -42.20)
>consensus
GGUCCCAAGCACCAGGGCGCCUACGCCGGCGCCUGGAACUACGGCUUCGAGGUAUCCGGAUCGUACAUCUGGCCCAGGUGAGUGUGA____AACAUUC_____
.........((((.((((...((((((((.((((.((((....).))).))))..))))..))))......)))).))))....................... (-22.27 = -22.13 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:27 2006