| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,553,436 – 9,553,538 |
| Length | 102 |
| Max. P | 0.579363 |
| Location | 9,553,436 – 9,553,538 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.73 |
| Mean single sequence MFE | -33.05 |
| Consensus MFE | -21.27 |
| Energy contribution | -20.58 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9553436 102 - 22407834 ---------AA-UUGU-U---ACCAGGUACGAGGGCGAGUGGUACAACAACCGGAAGCACGGUUACGGAGUGACUACUUUCCGCGACGGUACCGUCGAGGAGGGCAAGUACAAGAA ---------..-....-.---.....((((....(((((((((((..((((((......)))))..)..)).)))))))(((.(((((....))))).)))..))..))))..... ( -33.40) >DroVir_CAF1 6940 105 - 1 ----------A-UCCAAUAUACACAGAUACGAGGGCGAGUGGUACAACAAUCGCAAGCAUGGCUAUGGUGUCACCACGUUCCGUGAUGGCAACGUCGAGGAGGGAAAAUACAAGAA ----------.-(((.............(((.((((((.((......)).)))).....((((......)))))).)))(((.(((((....))))).))).)))........... ( -29.20) >DroGri_CAF1 6915 106 - 1 ----------ACUCUGCUUCACAUAGAUAUGAGGGCGAGUGGUACAAUAAUCGCAAGCAUGGCUAUGGUGUGACCACGUUCCGUGAUGGCACCGUCGAGGAGGGCAAAUACAAGAA ----------.((((.(((.((((((.((((...((((.((......)).))))...)))).))))(((((.(.((((...)))).).))))))).))).))))............ ( -32.30) >DroWil_CAF1 9112 102 - 1 ---------UG-UCCU-U---UUUAGAUAUGAGGGUGAGUGGUACAAUAACCGCAAACAUGGCUACGGUGUGACUACUUUCCGCGAUGGCACCGUCGAGGAGGGCAAAUACAAGAA ---------((-((((-(---(((.........((.(((((((.((...((((............)))).))))))))).))..((((....)))))))))))))).......... ( -31.80) >DroMoj_CAF1 7290 111 - 1 CCCCCCUCCCG-UCCAUU----GCAGAUAUGAGGGCGAGUGGUACAACAAUCGCAAGCACGGCUAUGGCGUGACCACGUUUCGCGAUGGCACCGUCGAGGAGGGCAAAUACAAGAA ...((((((((-.(((((----((.((.(((.((((((.((......)).))))...((((.(...).)))).)).))).)))))))))......)).))))))............ ( -39.70) >DroAna_CAF1 4822 101 - 1 ---------CA-UC-C-C---AACAGAUACGAGGGCGAGUGGUACAACAACCGCAAGCACGGUUAUGGUGUGACCACCUUCCGGGACGGCACCGUCGAGGAGGGCAAGUACAAGAA ---------..-..-.-.---......(((....((..(((((......)))))..))..((((((...)))))).((((((..((((....))))..))))))...)))...... ( -31.90) >consensus __________A_UCCA_U___AACAGAUACGAGGGCGAGUGGUACAACAACCGCAAGCACGGCUAUGGUGUGACCACGUUCCGCGAUGGCACCGUCGAGGAGGGCAAAUACAAGAA .........................(.(((....((..(((((.((...((((..(((...))).)))).))))))).((((.(((((....))))).)))).))..))))..... (-21.27 = -20.58 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:25 2006