Locus 3305

Sequence ID 2L_DroMel_CAF1
Location 9,553,276 – 9,553,396
Length 120
Max. P 0.757954
window5251

overview

Window 1

Location 9,553,276 – 9,553,396
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.11
Mean single sequence MFE -49.67
Consensus MFE -41.90
Energy contribution -41.99
Covariance contribution 0.09
Combinations/Pair 1.25
Mean z-score -1.93
Structure conservation index 0.84
SVM decision value 0.49
SVM RNA-class probability 0.757954
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9553276 120 - 22407834
CUGGCGCGUUCGCGCAAACUCCGCGACCGAAUUGCGGCCGCUUUGAGCUCAGCGCAGCGUGCCCUCAAGAUGGCGAUGCAGCGCUCCGACAUGGCCAUUUCCCGCAUGGCCACCGCGGCG
...((((....))))......(((((.....)))))(((((.........(((((.(((((((........))).)))).)))))......(((((((.......)))))))..))))). ( -49.30)
>DroVir_CAF1 6780 120 - 1
CUGGCGCGUUCGCGCAAAUUCCGUGACCGCAUCACGGCCGCCGUCAAUUCCGCGCAGCGCGCUCUCAAGAUGGCCAUGCAACGCUCGGACAUGGCCAUCUCGCGCAUGGCCACAGCCGCA
..((((((.(((((.......))))).))).....((((((((.......)).)).(((((......((((((((((((........).))))))))))))))))..))))...)))... ( -54.40)
>DroGri_CAF1 6755 120 - 1
CUGGCACGUUCGCGCAAAUUCCGUGACCGCAUCACGGCCGCCGUCAAUUCCGCGCAGCGUGCUCUCAAAAUGGCCAUGCAGCGCUCCGAUAUGGCCAUCUCGCGCAUGGCCACCGCCGCU
..((((((((.((((.((((((((((.....))))))........))))..)))))))))))).......(((((((((.(((....(((......))).))))))))))))........ ( -45.30)
>DroWil_CAF1 8952 120 - 1
CUGGCGCGUUCGCGCAAAUUCCGUGACCGCAUUACGGCCGCCGUUAAUUCAGCCCAACGUGCCCUCAAAAUGGCCAUGCAACGUUCCGACAUGGCCAUUUCACGCAUGGCCACUGCCGCA
..((((((.(((((.......))))).))).....((((((.(......).)).....((((.....((((((((((((........).)))))))))))...))))))))...)))... ( -44.20)
>DroMoj_CAF1 7130 120 - 1
CUGGCGCGUUCGCGCAAAUUCCGUGACCGUAUCACGGCCGCCGUUAAUUCCGCGCAGCGUGCCCUCAAAAUGGCCAUGCAGCGCUCCGACAUGGCCAUCUCGCGCAUGGCCACAGCCGCU
..((((((((.((((.(((((.(((.(((.....))).))).)..))))..)))))))))))).......(((((((((.(((..((.....))......))))))))))))........ ( -46.60)
>DroAna_CAF1 4662 120 - 1
CUGGCGCGCUCCCGCAAAUUCCGCGACCGAAUCACGGCGGCGGUGAACGCGGCCCAGCGCGCCCUCAAGAUGGCCAUGCAGCGGUCGGACAUGGCCAUCUCCCGCAUGGCCACAGCCGCG
..((((((((.((((.....((((..(((.....)))..)))).....))))...))))))))....((((((((((((........).)))))))))))..(((..(((....)))))) ( -58.20)
>consensus
CUGGCGCGUUCGCGCAAAUUCCGUGACCGCAUCACGGCCGCCGUCAAUUCCGCGCAGCGUGCCCUCAAAAUGGCCAUGCAGCGCUCCGACAUGGCCAUCUCGCGCAUGGCCACAGCCGCA
..((((((((.((((.....(.(((.(((.....))).))).)........))))))))))))....((((((((((((........).)))))))))))...((..(((....))))). (-41.90 = -41.99 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:24 2006