Locus 3304

Sequence ID 2L_DroMel_CAF1
Location 9,551,696 – 9,551,791
Length 95
Max. P 0.987503
window5250

overview

Window 0

Location 9,551,696 – 9,551,791
Length 95
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 71.86
Mean single sequence MFE -21.95
Consensus MFE -16.58
Energy contribution -16.83
Covariance contribution 0.25
Combinations/Pair 1.33
Mean z-score -1.82
Structure conservation index 0.76
SVM decision value 2.08
SVM RNA-class probability 0.987503
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9551696 95 + 22407834
CAAAAUUUAUUAUCACUCACCUUCAUUUUCU-UGCCGCCUCCACCGCC------GCCUCCUU-UUCCGCCCAUGGCCAUGCCCACCGGCGUGGCUGGCUUAGC
...............................-.((.((.......)).------))......-....(((...(((((((((....))))))))))))..... ( -22.40)
>DroSec_CAF1 2121 97 + 1
CAAAAUUUGUUAUCACUCACCUUCAUUUUUUUUGCCGCCUCCACCGCC------GCCUCCUUUUUCCGCCUAUGGCCAUGCCCACCGGCGUGGCUGGUUUGGC
.................................((.((.......)).------))...........(((..((((((((((....))))))))))....))) ( -22.70)
>DroWil_CAF1 7302 84 + 1
-CA----------AACUCACCUUCAUUUUCU-UGCCGCCGCCUCCAC------CGCCUGCUU-UACCGCCCAUUGCCAUGCCCACCGGCGUUGCUGGCUUGGC
-..----------..................-.(((((.((......------.))..))..-....(((....((.(((((....))))).)).)))..))) ( -17.60)
>DroMoj_CAF1 5520 86 + 1
CAAAAUUUUCAUUGACUCACCUUCAUUUUCU-UGCCACCACCGC---------------CUU-UGCCGCCCAUGGCCACGCCCACCGGUGUCGCGGGCUUAGC
...............................-.((.....((((---------------...-.((((....)))).(((((....))))).)))).....)) ( -15.60)
>DroAna_CAF1 3020 88 + 1
-------------AACUCACCUUCAUUUUCU-UGCCGCCACCGCCGCCUCCACCGCCUCCUU-UACCACCCAUGGCCAUGCCCACGGGCGUGGCCGGCUUGGC
-------------..................-....((((..(((((.......))......-..........(((((((((....)))))))))))).)))) ( -30.30)
>DroPer_CAF1 4266 77 + 1
------AUGCUGCCACUCACCUUCAUCUUCU-UUCCGCC------------------ACCUU-UGCCGCCCAUGGCCAUGCCCACCGGUGUGGCCGGCUUGGC
------.....((((................-....((.------------------.....-.)).(((...(((((((((....)))))))))))).)))) ( -23.10)
>consensus
_AA___UU__U_UCACUCACCUUCAUUUUCU_UGCCGCCACCACCGC_______GCCUCCUU_UACCGCCCAUGGCCAUGCCCACCGGCGUGGCUGGCUUGGC
...................................................................(((...(((((((((....))))))))))))..... (-16.58 = -16.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:22 2006