| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,550,325 – 9,550,422 |
| Length | 97 |
| Max. P | 0.589296 |
| Location | 9,550,325 – 9,550,422 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.67 |
| Mean single sequence MFE | -35.43 |
| Consensus MFE | -27.74 |
| Energy contribution | -28.02 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9550325 97 + 22407834 UGGCCUCCGUGGCUCGCGGCAGUUCCUGGAAAUCGGGCAUGGACUUCUUUCGCUGCAGCGUCACAUUGAUGGGCACCGACUGCAA-----AAUG--UGG-GAU---AG ((.((((.(((...(((.(((((....((((.((.......)).))))...))))).)))...))).)).)).))((.((.....-----...)--).)-)..---.. ( -28.80) >DroPse_CAF1 2968 101 + 1 UGGCCUCGGUGGCACGCGGCAGUUCCUGGAAGUCUGGCAUGGACUUCUUUCGCUGCAGCGACACAUUGAUGGGCACCGUCUAAAA-----GAAA--UAAGCAAAAUUC ((.((((((((...(((.(((((....((((((((.....))))))))...))))).)))...)))))).)).))..........-----....--............ ( -34.10) >DroWil_CAF1 4434 99 + 1 UCGCCUCGGUGGCCCGCGGCAGCUCUUGAAAAUCUGGCAUGGAUUUCUUUCGCUGCAGCGACACAUUAAUGGGCGCCAUCUAAAC-----AAAAGAUAA-CAU---UU .(((((.((((...(((.(((((....((((.(((.....)))))))....))))).)))...))))...)))))..((((....-----...))))..-...---.. ( -27.30) >DroYak_CAF1 123 105 + 1 UGGCCUCCGUGGCGCGCGGCAGCUCCUGGAAAUCGGGCAUGGACUUCUUCCGCUGCAGCGUCACAUUGAUGGGCACCGACUGCAAAUGGAAAUG--UGG-CAGAAGAG ..((((..(((((((...(((((.((((.....))))...(((.....)))))))).)))))))......)))).....((((..((....)).--..)-)))..... ( -38.70) >DroMoj_CAF1 3202 97 + 1 UCGCCUCCGUGGCGCGCGGCAGCUCCUGGAAGUCGGGCAUCGACUUCUUCCGCUGCAGCGUCACAUUGAUGGGCACCGUCUGCAU-----CGAG--GUG-GAA---AG (((((((.(((((((...(((((....((((((((.....))))))))...))))).)))))))...(((((...))))).....-----.)))--)))-)..---.. ( -48.00) >DroPer_CAF1 2892 101 + 1 UGGCCUCGGUGGCACGCGGCAGCUCCUGGAAGUCUGGCAUGGACUUCUUUCGCUGCAGCGACACAUUGAUGGGCACCGUCUAAAA-----GAAA--UAAGCAAAAUUC ((.((((((((...(((.(((((....((((((((.....))))))))...))))).)))...)))))).)).))..........-----....--............ ( -35.70) >consensus UGGCCUCCGUGGCACGCGGCAGCUCCUGGAAAUCGGGCAUGGACUUCUUUCGCUGCAGCGACACAUUGAUGGGCACCGUCUAAAA_____AAAA__UAA_CAA___AG ..((((..(((...(((.(((((....((((((((.....))))))))...))))).)))...)))....)))).................................. (-27.74 = -28.02 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:18 2006