Locus 33

Sequence ID 2L_DroMel_CAF1
Location 146,104 – 146,211
Length 107
Max. P 0.500000
window49

overview

Window 9

Location 146,104 – 146,211
Length 107
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -37.98
Consensus MFE -25.24
Energy contribution -27.05
Covariance contribution 1.81
Combinations/Pair 1.09
Mean z-score -1.24
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 146104 107 - 22407834
CACGGUCAGAGACUGCAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACCGUUCGUUCUGCGGCUUCUGCUGCACUGACACGG
..((((((((((..((....((((((.(.....((((.....))))......).)))))).......(------(((...)))))))))(((((....))))).))))).)). ( -40.30)
>DroPse_CAF1 35466 113 - 1
CUCUGGCUGGGCGUAUAUUUGCCAAAAGGCAAUUGACGCGCAUUCAACACUGUGCGAGGCUAUAUCUUACAAUCGGAACAAUCAGCUUUCCGGCACCUGCUGCACCAACACGG
...((..((.((((....(((((....)))))...)))).))..))...(((((.(..((.............(((((.........)))))((....)).))..)..))))) ( -29.50)
>DroSec_CAF1 28549 107 - 1
CACGGUCAGAGAGUGCAUCUGCCCCAGGGUUUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACUGUUCGUUCUGCGGCAUCUGCUGCACUGACACGG
..(((((((.(...(((..((((.(((..(((((((((....((((((.....))))))...))))))------))........)..))).))))..)))..).))))).)). ( -39.80)
>DroSim_CAF1 30169 107 - 1
CACGGUCAGAGAGUGCAUCUGCCCCAGGGUUUCGGAGGUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACCGUUCGUUCUGCGGCAUCUGCUGCACUGACACGG
...(..(((((((.......((((((.(.....((((.....))))......).)))))).)))))))------..).(((((((...((((((....)))))).))).)))) ( -40.80)
>DroEre_CAF1 40092 107 - 1
CUCGGUCAAAGAGUGCAUCUGCCCCAGAGUCUCGGAGAUACACUCCACAUUCCGCGGGGCUUUUUCUG------GGCACAGUUCGGUCUGCGGCAUAUGCUGCACUGACACAG
....((((.(((.((...(((.(((((((((((((((.....)))).(.....).)))))....))))------))..)))..)).)))(((((....)))))..)))).... ( -35.80)
>DroYak_CAF1 28721 107 - 1
CUCGGUCAAAGAGUGCAUCUGCCCCAGAGUCUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUCUG------GACACAGUGCGGUCUGCGGCAUAUGCUGCACUGACACGG
..((((((.(((.((((((((...))))(((.((((((....((((((.....))))))...))))))------)))....)))).)))(((((....)))))..)))).)). ( -41.70)
>consensus
CACGGUCAGAGAGUGCAUCUGCCCCAGGGUUUCGGAGAUACACUCCACAUUACGUGGGGCUUUUUCUG______GACACAGUUCGUUCUGCGGCAUCUGCUGCACUGACACGG
....(((((...........((((((.(.....((((.....))))......).))))))............................((((((....))))))))))).... (-25.24 = -27.05 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:46 2006