| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,548,908 – 9,549,016 |
| Length | 108 |
| Max. P | 0.969151 |
| Location | 9,548,908 – 9,549,016 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -6.30 |
| Consensus MFE | -6.30 |
| Energy contribution | -6.30 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | 0.18 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.969151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9548908 108 - 22407834 AUGAAACAAAAAGAGAAACAAACAACAACAACUUAACCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ........................................((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30) >DroEre_CAF1 7966 81 - 1 ---------------------------ACACCUUAACCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ---------------------------.............((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30) >DroYak_CAF1 8403 99 - 1 AAGAAACAAAA------ACAAACA---ACAAUUUCCCCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ...........------.......---.............((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30) >consensus A_GAAACAAAA______ACAAACA___ACAACUUAACCUAAUCAAUGUUUAAUCAUGAUAAAUAAACGCGUAAUAUAUUUAAUCUACGGCUACUUAAUGUAAUACAUA ........................................((((.((......))))))..........(((.((((((....(....)......)))))).)))... ( -6.30 = -6.30 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:14 2006