| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,548,604 – 9,548,717 |
| Length | 113 |
| Max. P | 0.990280 |
| Location | 9,548,604 – 9,548,717 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 94.81 |
| Mean single sequence MFE | -30.34 |
| Consensus MFE | -24.58 |
| Energy contribution | -24.78 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.81 |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.990280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9548604 113 - 22407834 AUUAGCAAAAUUUUGUGGGACCGAAAACAGCACCAACAACUAAAGGAGCAACUG-CAAUGUAUCUACAAGAUAUCAGGUAUCUUGGGCU-----CUGUUUUUGGUUUACCAGUUGAACA .(((((.........(((((((((((((((..((.............((....)-)..........((((((((...))))))))))..-----))))))))))))..))))))))... ( -29.20) >DroSec_CAF1 7838 113 - 1 AUUAGCAAAAUUUUGUGGGACCGAAAACAGCACCAACAACUAAAGGAGCAACAG-CAAUGUAUCUACAAGAUAUCACGUAUCUUGGGCU-----CUGUUUUUGGUUUACCAGUUGAACA .(((((.........(((((((((((((((..((..........(((...(((.-...))).))).((((((((...))))))))))..-----))))))))))))..))))))))... ( -31.00) >DroSim_CAF1 7855 113 - 1 AUUAGCAAAAUUUUGUGGGACCGAAAACAGCACCAACAACUAAAGGAGCAACAG-CAAUGUAUCUACAAGAUAUCAUGUAUCUUGGGCU-----CUGUUUUUGGUUUACCAGUUGAACA .(((((.........(((((((((((((((..((..........(((...(((.-...))).))).((((((((...))))))))))..-----))))))))))))..))))))))... ( -31.00) >DroEre_CAF1 7654 112 - 1 AUUAGCAAAAUUUUGUGGGACCGAAAACAGCACCAACAACUA-AGGAGCAAC-GCAAAUGUAUCUACAAGAUAUCAAGUAUCUUGGGCU-----CUGUUUUUGGUUUACCAGUUGAACA .(((((.........(((((((((((((((..((........-(((.(((..-.....))).))).((((((((...))))))))))..-----))))))))))))..))))))))... ( -29.10) >DroYak_CAF1 8072 119 - 1 AUUAGCAAAAUUUUGUGGGACCGAAAACAGCACCAACAACUAAAGGAGCAACAGCAAAUGUAUCUACAAGAUAUCAAGUAUCUUGUGCUCCGCUCCGUUUUUGGUUUACCAGUUGAACA .(((((.........(((((((((((((.(......).......(((((.(((.....)))...((((((((((...))))))))))....)))))))))))))))..))))))))... ( -31.40) >consensus AUUAGCAAAAUUUUGUGGGACCGAAAACAGCACCAACAACUAAAGGAGCAACAG_CAAUGUAUCUACAAGAUAUCAAGUAUCUUGGGCU_____CUGUUUUUGGUUUACCAGUUGAACA .(((((.........(((((((((((((((.............(((.(((........))).))).((((((((...)))))))).........))))))))))))..))))))))... (-24.58 = -24.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006