Locus 3297

Sequence ID 2L_DroMel_CAF1
Location 9,548,037 – 9,548,133
Length 96
Max. P 0.514573
window5239

overview

Window 9

Location 9,548,037 – 9,548,133
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 83.06
Mean single sequence MFE -21.58
Consensus MFE -15.32
Energy contribution -16.56
Covariance contribution 1.24
Combinations/Pair 1.17
Mean z-score -1.55
Structure conservation index 0.71
SVM decision value -0.04
SVM RNA-class probability 0.514573
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9548037 96 + 22407834
CUCAAGUCUUUCAUUUUCUAAGGUUUUACAUUUGUGGAGCUUAUUCAUUUCAAU--UUUCUGUAUGACACGAUCUAGAAAGGAUGUCGGAUUGAGAAA
(((((.(((..((((((((((((((((((....)))))))))..((((..((..--....)).)))).......)))))..))))..))))))))... ( -21.00)
>DroSec_CAF1 7276 97 + 1
CUCAAGUCUUUCAUUUCGUAAGGUUCUACAUUUGUGGAGCUUAA-CAUUUCAAUCAUUUCUGCAUGACACGAUCUAGAAAGAAUGUCGGAUUGGGAAU
(((((.(((..(((((.((.(((((((((....))))))))).)-)..........((((((.((......)).)))))))))))..))))))))... ( -23.90)
>DroSim_CAF1 7293 97 + 1
CUCAAGUCUUUCAUUUCGUAAGGUUCUACAUUUGUGGAGCUUAU-CAUUUCAAUCAUUUCUGCAUGACACGAUCUAGAAAUAAUGUCGGAUUGGGAAU
(((((.(((..((((.....(((((((((....)))))))))..-..........(((((((.((......)).)))))))))))..))))))))... ( -21.50)
>DroEre_CAF1 7096 85 + 1
CUCAAGUCUUUCAUUUCGUAAGGUUCUGCAUUUGUGGAGCUUAU-CAUUUUCAC--AUUCCCGAU----------AUAAUGAACAUCGAAUUGGGAAA
........(..((.((((..((((((..(....)..)))))).(-((((.((..--......)).----------..)))))....)))).))..).. ( -18.60)
>DroYak_CAF1 7493 95 + 1
CUCAAGUCUUUCAUUUGGUAAGGUUCUACAUUUGUGGAGCUUAU-CAUUUGCAU--UUUCACAAUGACACGAUCUAGAAAGAAUGUAGGAUUGGGAAA
(((((.((((.(((((((((((.((((((....)))))))))))-)...(((((--(.....)))).))...........))))).)))))))))... ( -22.90)
>consensus
CUCAAGUCUUUCAUUUCGUAAGGUUCUACAUUUGUGGAGCUUAU_CAUUUCAAU__UUUCUGCAUGACACGAUCUAGAAAGAAUGUCGGAUUGGGAAA
(((((.(((..(((((....(((((((((....)))))))))..............((((((.((......)).)))))))))))..))))))))... (-15.32 = -16.56 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:12 2006