Locus 3294

Sequence ID 2L_DroMel_CAF1
Location 9,535,010 – 9,535,102
Length 92
Max. P 0.999438
window5235

overview

Window 5

Location 9,535,010 – 9,535,102
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 76.47
Mean single sequence MFE -33.64
Consensus MFE -22.67
Energy contribution -24.51
Covariance contribution 1.84
Combinations/Pair 1.23
Mean z-score -3.11
Structure conservation index 0.67
SVM decision value 3.60
SVM RNA-class probability 0.999438
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9535010 92 - 22407834
UGUCGACUGUGACACUUCACCGUCACGCUGUCGGCCACCGCUGAUGGUCCACCACCUCCAGGUCCACUGCCAACUGUCGACGGCAAUUGAUC
.(((((..(((((........)))))(((((((((....((.(.(((.((..........)).)))).)).....)))))))))..))))). ( -31.30)
>DroSec_CAF1 124 86 - 1
UGUCGACUGUGACACUUCACCGUCACGCUGUCGGCCACCAUUGGUGGUCCA---CCUCCUGGGCC---GCCAACUGCCGACGGCAAUUGAUC
.(((((..(((((........)))))(((((((((.....(((((((((((---.....))))))---)))))..)))))))))..))))). ( -44.20)
>DroSim_CAF1 124 86 - 1
UGUCGACUGUGGCAUUUCACCGUCACGCUGUCGGUCACCACUGCUGGUCCA---CCUCCAGGGCC---GCUAACUGCCGACGGCAACUGAUC
.((((((.((((....)))).)))..(((((((((.......((.(((((.---......)))))---)).....)))))))))....))). ( -33.50)
>DroEre_CAF1 134 86 - 1
UGUCGACUGUGGCACUUCACCGUCACGCCGUCGGCCACCACUGGUGGUCCA---CCACCUGCGCC---CCCAAUUGCCGACGGCAACUGAUC
.((((((.((((....)))).)))..(((((((((.......(((((....---)))))((....---..))...)))))))))....))). ( -34.50)
>DroAna_CAF1 139 71 - 1
UGCCGACUGUGGCACUUGACCAUCACACUGUCCGGCC-CA-------CCCA---CUGCCUGGGCC----------GACGACGCCACCGUAUC
.....((.(((((...((.....))....((((((((-((-------....---.....))))))----------)..)))))))).))... ( -24.70)
>consensus
UGUCGACUGUGGCACUUCACCGUCACGCUGUCGGCCACCACUGGUGGUCCA___CCUCCUGGGCC___GCCAACUGCCGACGGCAACUGAUC
....(((.((((....)))).)))..(((((((((..........((((((........))))))..........)))))))))........ (-22.67 = -24.51 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:08 2006