| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 988,876 – 988,981 |
| Length | 105 |
| Max. P | 0.913050 |
| Location | 988,876 – 988,981 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.79 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -26.03 |
| Energy contribution | -26.23 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 988876 105 + 22407834 GGCGAUGGCAAUUCAUGUUUUUUUUCCUUU----UUUUAUAUGAUUCAAAUGCUGCCAUGCAAAUGCCCUCGCUUGGGUGCACUGCAAAAGCAAAUGUGUACUAAGAGC (((((.((((..((((((............----....))))))......(((......)))..)))).)))))..((((((((((....)))...)))))))...... ( -28.79) >DroSec_CAF1 109771 108 + 1 GGCGAUGGCAAUUCAUGUGUUUUUUCGUUU-UUCUUUUAUAUGAUUCAAAUGCUGCCAUGCAAAUGCCCUUGCUUGGGUGCACUGCAAAAGCAAAUGUGUCCUUAGAGC (((((.((((..(((((((...........-......)))))))......(((......)))..)))).))))).(((..((.(((....)))..))..)))....... ( -26.73) >DroSim_CAF1 110386 109 + 1 GGCGAUGGCAAUUCAUGUUUUUUUUCGUUUUUUCUUUUAUAUGAUUCAAAUGCUGCCAUGCAAAUGCCCUCGCUUGGGUGCACUGCACAAGCAAAUGUGUCCUUAGAGC (((((.((((..((((((....................))))))......(((......)))..)))).))))).(((..((.(((....)))..))..)))....... ( -27.35) >DroEre_CAF1 115865 106 + 1 GGCGAUGGCAAUUCAUGUUUUC--CUAUUUCUCCUUUUAUAUGACUCAAAUGCUGCCAUGCAAAUGCUCUCGCUUGGCUGCACUGCAAAAGCAAAUGUGUACCUA-AGC ...((.((((..((((((....--..............))))))......(((......)))..)))).))((((((.((((((((....)))...))))).)))-))) ( -25.07) >DroYak_CAF1 116418 108 + 1 GGCGAUGGCAAUUCAUGUUUUCUACUUUUUCCUCCUUUAUAUGAUUCAAAUGCUGCCAUGCAAAUGCUCUCGCCUGGCUGCACUGCAAAAGCAAAUGUGUACCUA-AGC (((((.((((..((((((....................))))))......(((......)))..)))).))))).((.((((((((....)))...)))))))..-... ( -27.55) >consensus GGCGAUGGCAAUUCAUGUUUUUUUUCGUUU_UUCUUUUAUAUGAUUCAAAUGCUGCCAUGCAAAUGCCCUCGCUUGGGUGCACUGCAAAAGCAAAUGUGUACUUAGAGC (((((.((((..((((((....................))))))......(((......)))..)))).)))))((((((((((((....)))...))))))))).... (-26.03 = -26.23 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:07 2006