Locus 3287

Sequence ID 2L_DroMel_CAF1
Location 9,527,910 – 9,528,012
Length 102
Max. P 0.998967
window5215

overview

Window 5

Location 9,527,910 – 9,528,012
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.41
Mean single sequence MFE -40.34
Consensus MFE -33.94
Energy contribution -34.66
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -2.85
Structure conservation index 0.84
SVM decision value 3.30
SVM RNA-class probability 0.998967
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9527910 102 + 22407834
GAUUUGAAUGUUUUGUUGUGCUUGGCAAGAUAUCUGGGUGGGUGGCUCGAAUACUUCGCGGAAGCCCCUUUCAUUUG-GGCCAAACCGAGCCAAACACCAGCA
.......((((((((((......))))))))))...((((..(((((((........((....))(((........)-))......)))))))..)))).... ( -37.30)
>DroSec_CAF1 35488 103 + 1
GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAACACUUCGCGGAAGCCCCUUUCAUUUGGGGCCAAACCGAGCCAAACACCAGCA
.....((((((((((((......)))))))))))).((((..((((((((.....))..((..(((((........)))))....))))))))..)))).... ( -45.10)
>DroSim_CAF1 38596 103 + 1
GAUUUGGGUGCUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAACACUUCGCGGAAGCCCCUUUCAUUUGGGGCCAAACCGAGCCAAACACCAGCA
.....(((((..(((((......)))))..))))).((((..((((((((.....))..((..(((((........)))))....))))))))..)))).... ( -40.60)
>DroEre_CAF1 39242 93 + 1
GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUUGAAUACUUCGCGGAAGCCCCUUUCAUUUG-GGCCAAUCCGAGCCAG---------
.(((..(((((((((((......)))))))))))..)))...(((((((........((....))(((........)-))......))))))).--------- ( -35.10)
>DroYak_CAF1 43506 102 + 1
GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAAUACUUCGCGGAAGCCCCUUUCAUUUG-GGCCAAUCCGAGCCAAACACCAGCA
.....((((((((((((......)))))))))))).((((..(((((((........((....))(((........)-))......)))))))..)))).... ( -43.60)
>consensus
GAUUUGGGUGUUUUGUUGUGCUUGGCAAGACAUCUGGGUGGGUGGCUCGAAUACUUCGCGGAAGCCCCUUUCAUUUG_GGCCAAACCGAGCCAAACACCAGCA
.....((((((((((((......)))))))))))).((((..(((((((........((....))(((........).))......)))))))..)))).... (-33.94 = -34.66 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:50 2006