Locus 3286

Sequence ID 2L_DroMel_CAF1
Location 9,527,614 – 9,527,707
Length 93
Max. P 0.806900
window5214

overview

Window 4

Location 9,527,614 – 9,527,707
Length 93
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.73
Mean single sequence MFE -25.37
Consensus MFE -17.01
Energy contribution -19.07
Covariance contribution 2.06
Combinations/Pair 1.17
Mean z-score -1.91
Structure conservation index 0.67
SVM decision value 0.64
SVM RNA-class probability 0.806900
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9527614 93 + 22407834
UUUAAUGCACCGUUUCCCGCCACUCUUGGCACA---------------------UCUCACAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGUAAC
((((((((((.(((.((.((((....))))...---------------------..((((((.((((...)))).)))))).....)).)))..)))).))))))......... ( -24.20)
>DroSec_CAF1 35196 93 + 1
AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA---------------------UCUCGCAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC
..................((..(((((((((((---------------------..((((...((((..(....)..))))......))))..)))))...))))))..))... ( -26.50)
>DroSim_CAF1 38304 93 + 1
AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA---------------------UCUCGCAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC
..................((..(((((((((((---------------------..((((...((((..(....)..))))......))))..)))))...))))))..))... ( -26.50)
>DroEre_CAF1 38900 93 + 1
AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA---------------------GCUCACAUCUCGUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAGC
.(((((((((((((.((.((((....))))..(---------------------(.((((((.(((.....))).))))))))...)).))).))))).))))).......... ( -25.70)
>DroYak_CAF1 43209 114 + 1
AUUAAUGCACAGUUUCCCGCCACUCUUGGCACAUCUUACAUCGCACAUCUCACAUCUCACAUCUCGUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC
.(((((((((((......((((....))))..........((((.((..((((((.((((..........)))).))))))....)))))).)))))).))))).......... ( -30.70)
>DroAna_CAF1 38153 73 + 1
AUGAAUGCACCCUCGUCCCCCACUCG-----------------------------------------UCGCUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCUGCAAC
.....((((..(((......(((..(-----------------------------------------((((..(..........)..)))))..))).......))).)))).. ( -18.62)
>consensus
AUUAAUGCACAGUUUCCCGCCACUCUUGGCACA_____________________UCUCACAUCUCAUUCGGUGACAUGUGACUUUUGGCGACUUGUGCAAUUAAGAGCAGCAAC
.....(((((((((.((.((((....))))..........................((((((.(((.....))).)))))).....)).))).))))))............... (-17.01 = -19.07 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:48 2006