Locus 3284

Sequence ID 2L_DroMel_CAF1
Location 9,510,775 – 9,510,866
Length 91
Max. P 0.534110
window5212

overview

Window 2

Location 9,510,775 – 9,510,866
Length 91
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 76.72
Mean single sequence MFE -24.49
Consensus MFE -12.46
Energy contribution -12.10
Covariance contribution -0.36
Combinations/Pair 1.35
Mean z-score -1.76
Structure conservation index 0.51
SVM decision value 0.00
SVM RNA-class probability 0.534110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9510775 91 - 22407834
CGCA--AGUGA-----UUUUUAUAAUACAUUUU-UAAAGCUGGC--CC-AUUGAAGCGAAGAAAGGG-CGGUGGGUGGAAAAGAAAACGCCCACGCGCACUGG
.(((--(((((-----((.....))).))))).-....((..((--((-...............)))-).(((((((..........)))))))))))..... ( -24.36)
>DroSec_CAF1 18369 93 - 1
CGCA--AGUGA-----UUUUUAUAAUACAUUUU-UAAAGUUGGUCCCCAAUUUAAGCGAAGAAAGGG-CGGUGGGUGGAAAAGA-AACGCCCACGCGCACUGG
((((--(((((-----((.....))).))))).-..(((((((...)))))))..))).....((.(-(((((((((.......-..))))))).))).)).. ( -27.20)
>DroSim_CAF1 20830 92 - 1
CGCA--AGUGA-----UUUUUAUAAUACAUUUU-UAAAGUUUGUCCCC-AUUCAAGCGAAGAAAGGG-CGGUGGGUGGAAAAGA-AACGCCCACGCGCACUGG
....--(((..-----...........(.((((-(...(((((.....-...))))).))))).).(-(((((((((.......-..))))))).)))))).. ( -23.70)
>DroEre_CAF1 19290 90 - 1
CGCA--AGUGA-----UUUUUAUGAUACAUUUU-UAAAGUUGGC--CC-AUUCAAGCGGGGAAAGGG-CGGUGGGCGGAAAAGA-AACGCCCACGCGCACUGG
((((--(((((-----((.....))).))))).-........((--((-.(((.......))).)))-).(((((((.......-..))))))))))...... ( -28.10)
>DroWil_CAF1 92864 95 - 1
CGCAAAAGUGACUGCCUUUUGUUAAUCAAUUUUUUAAAAUUCAC--CC-ACUCA--CCUAGAACCAUCAGGUGAGUGCUUC--A-ACUACCCACACACAGACA
.(((((((.(....))))))))......................--.(-(((((--(((.((....)))))))))))....--.-.................. ( -19.10)
>consensus
CGCA__AGUGA_____UUUUUAUAAUACAUUUU_UAAAGUUGGC__CC_AUUCAAGCGAAGAAAGGG_CGGUGGGUGGAAAAGA_AACGCCCACGCGCACUGG
.......(((.......(((((.((......)).)))))...............................(((((((..........))))))).)))..... (-12.46 = -12.10 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:47 2006