Locus 3283

Sequence ID 2L_DroMel_CAF1
Location 9,502,893 – 9,502,988
Length 95
Max. P 0.678962
window5211

overview

Window 1

Location 9,502,893 – 9,502,988
Length 95
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 91.32
Mean single sequence MFE -23.12
Consensus MFE -20.04
Energy contribution -20.60
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.52
Structure conservation index 0.87
SVM decision value 0.30
SVM RNA-class probability 0.678962
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 9502893 95 + 22407834
UAUCGAUCGAGAGCUUGAAAUCUUGAAAAGCAGCUAGGAGGCCAACCAAAGAAAACAA---CGCAGGCCCACCCACCUGCAGCUUUUGGAGUAGCAAA
..((((.(....).))))...(((.((((((.(((....)))................---.(((((........))))).)))))).)))....... ( -23.00)
>DroSec_CAF1 10554 95 + 1
UAUCGAUCGAGAACUUGAAAUCUUGAAAAGCAGCUAG---GCCAUCCAAAGAAAACAACGACGCAGGGCCACCCACCUGCAGCUUUUGGAGUAGCAAA
......((((((........))))))......((((.---.(((((....))..........(((((........)))))......)))..))))... ( -22.80)
>DroSim_CAF1 13244 95 + 1
UAUCGAUCGAGAACUUGAAAUCUUGAAAAGCAGCUAG---GCCAUCCAAAGAAAACAACGACGCAGGGCCACCCACCUGCAGCUUUUGGAGUAGCAAA
......((((((........))))))......((((.---.(((((....))..........(((((........)))))......)))..))))... ( -22.80)
>DroYak_CAF1 10985 92 + 1
UAUCGAUCGAGAAAUCGAAAUCUUGAAAAGCAGCUGG---GCAGCCCAAAGAAAACAA---CGCAGUGCCACCCACCUGCAGCUUUUGGAGUAGCAAA
......((((....))))...(((.((((((...(((---(...))))..........---.((((((.....)).)))).)))))).)))....... ( -23.90)
>consensus
UAUCGAUCGAGAACUUGAAAUCUUGAAAAGCAGCUAG___GCCAUCCAAAGAAAACAA___CGCAGGGCCACCCACCUGCAGCUUUUGGAGUAGCAAA
......((((....))))...(((.((((((.((......))....................(((((........))))).)))))).)))....... (-20.04 = -20.60 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:46 2006