| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 9,492,596 – 9,492,707 |
| Length | 111 |
| Max. P | 0.569715 |
| Location | 9,492,596 – 9,492,707 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.15 |
| Mean single sequence MFE | -36.92 |
| Consensus MFE | -25.98 |
| Energy contribution | -26.07 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 9492596 111 - 22407834 AGGUGGUGGGAGUGCGCUCCGGCGAAGAGGUCGCCAAGUGCAAGCAGGUCUACUGCGAUCCCAGCUACGUGCCCGAGAAGGUGAGA--UUCACAAAAGAUUUGUGUAAACUAG- ..(((((((((.((((((..(((((.....))))).)))))).((((.....))))..))))).))))..(((......))).((.--(((((((.....))))).)).))..- ( -39.40) >DroVir_CAF1 526 109 - 1 AGGUGGUGGGUGUCCGCUCAGGCGAUGAAAUUGCCAAAUGCAAGCAGGUGUACUGUGACCCCAGCUACGUGCCCGACAAGGUUAGUUAUCCAG---UUAUUGGUGUG-GCUAG- ..((((((((.(((.((...((((((...))))))....))..((((.....))))))))))).))))..(((......)))(((((((((((---...)))).)))-)))).- ( -34.10) >DroPse_CAF1 516 106 - 1 AGGUGGUGGGCGUGCGCUCUGGCGAGGAGGUGGCCAAGUGCAAGCAGGUCUACUGCGAUCCCAGCUAUGUGCCCGAGAAGGUGAGUAAAGCUGAGUAUACUCCUG-------G- (((.((((.((.((((((.((((.(.....).)))))))))).((((.....)))).....(((((.((..(((.....)).)..)).))))).)).))))))).-------.- ( -35.80) >DroYak_CAF1 640 112 - 1 AGGUGGUGGGUGUGCGCUCUGGCGACGAGGUCGCCAAGUGCAAGCAGGUCUACUGCGAUCCCAGCUACGUGACCGAGAAGGUAAGA--UUCAAAAAAGAAUUUUUUAAAUAUGU ..((((((((..((((((.(((((((...))))))))))))).((((.....))))...)))).))))...(((.....)))((((--(((......))))))).......... ( -41.50) >DroAna_CAF1 1310 111 - 1 AGGUAGUCGGCGUGCGCUCCGGCGACGAGGUCGCCAAGUGCAAGCAGGUCUACUGCGACCCCAGUUAUGUGCCCGAUAAGGUUAGU--GCCCAAAAACAUAGUUACUUAAGAU- ((((((((((..((((((..((((((...)))))).)))))).(((.((..((((......)))).)).))))))))..(((....--)))............))))).....- ( -35.10) >DroPer_CAF1 753 106 - 1 AGGUGGUGGGUGUGCGCUCUGGCGAGGAGGUGGCCAAGUGCAAGCAGGUCUACUGCGAUCCCAGCUAUGUGCCCGAGAAGGUGAGUAAACCUAAAAAUACUCGUG-------G- ..((((((((..((((((.((((.(.....).)))))))))).((((.....))))...)))).))))...((((((.((((......)))).......)))).)-------)- ( -35.60) >consensus AGGUGGUGGGUGUGCGCUCUGGCGACGAGGUCGCCAAGUGCAAGCAGGUCUACUGCGAUCCCAGCUACGUGCCCGAGAAGGUGAGU__UCCAAAAAAUAUUCGUGU__A__AG_ ..((((((((..((((((..(((((.....))))).)))))).((((.....))))...)))).))))....((.....))................................. (-25.98 = -26.07 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:42 2006